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This seems like it should be really straightforward, but I can't figure it out. When I go to File-->New there is no .bib file. Under File-->New-->Other-->Texlipse there is no .bib file.

Is there somewhere else that I should be looking to create this?

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You can save the new file with the extension bib and after this you can work like described at the user manual: http://texlipse.sourceforge.net/manual/bibtex.html

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