I found the amsmath package's pmatrix environment have a bit difference with LaTeX's pmatrix command. You can see it from:
\documentclass{article}
% \usepackage{amsmath}
\linespread{1.3}
\begin{document}
$\pmatrix{A&B\cr C&D\cr}$
% $\begin{pmatrix}A&B\cr C&D\cr\end{pmatrix}$
\end{document}
and:
\documentclass{article}
\usepackage{amsmath}
\linespread{1.3}
\begin{document}
% $\pmatrix{A&B\cr C&D\cr}$
$\begin{pmatrix}A&B\cr C&D\cr\end{pmatrix}$
\end{document}
Is this a feature of amsmath?

old form \pmatrix should be \begin{pmatrix}...So it looks like you are using a deprecated and no longer supported syntax. – Matthew Leingang Mar 15 '11 at 9:01bmatrix– Herbert Mar 15 '11 at 9:22