For the MWE below:
\documentclass{report}
\usepackage[left=2.5cm,right=2cm,top=2cm,bottom=2cm]{geometry}
\usepackage[T1]{fontenc}
\usepackage{pgfplots}
\begin{document}
\begin{figure}[H]
\begin{tikzpicture}
\begin{axis}[%
scaled y ticks = true,
width=1*\textwidth,
height=8cm,
xlabel={Query $\#$},
ylabel={Elapsed Time (in seconds)},
grid=both,
minor x tick num=5,
minor y tick num=5,
enlarge x limits=0,
legend entries={Original, byHalf, Random, Hybrid},
scaled x ticks = true
]
\addplot [
color=blue,mark=x,
solid,
line width=1.0pt
]
coordinates{
(0,39.0819) (1,2292) (2,4484.82) (3,6057.37) (4,38.3475) (5,15.4616) (6,38.5286) (7,15.411) (8,38.3627) (9,14.8773) (10,15.4079) (11,38.8762) (12,20.9027) (13,35.6657)
};
\addplot [
color=red,mark=x,
solid,
line width=1.0pt
]
coordinates{
(0,38.9575) (1,2720.19) (2,1929.3) (3,1677.22) (4,111.165) (5,68.6833) (6,94.4457) (7,76.0591) (8,94.0201) (9,109.844) (10,78.6465) (11,91.7805) (12,12.9179) (13,78.6684)
};
\end{axis}
\end{tikzpicture}
\end{figure}
\end{document}
If you compile it, you will see that the last part of the plot looks as if the lines are touching each other and they look like they are the same but actually there is about 50 seconds between them. This happens since the y-axis ticks advance (automatically) with steps of 1000.
How can I control this ? Is it possible to first make it go with steps of 100 then when it reaches 1000, switch to steps of 1000 ?

ytick={100,200,...,1000,2000,3000,...,6000},? – cmhughes Aug 31 '12 at 17:49