I think this is more like a bug for Texmaker. Here is description:
I'm using Texmaker on windows, and I wanted to add bibliography using:
\bibliographystyle{plain} % (uses file "plain.bst")
\bibliography{./references}
I noticed that when I use the option ``Use a "build" subdirectory for output files'' (from Texmaker configurations in the Commands tab) the bibliography does not appear on the output file. Yet when I disable this option, every thing works fine.
Any ideas how to keep using the "build" subdirectory option? I want to keep using it cause it helps keeping things organised.
... |bibtex %|...(% : filename without extension) – user18098 Dec 12 '12 at 12:20bibtex foobar\%.aux? – long tom Dec 14 '12 at 9:16