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I use IEEEtran bare_jrnl.tex and my .tex file builds on my machine without any problem. I use subfig package. (subfigure doesn't work)

When I try to submit my manuscript IEEE page says subfig is missing.enter image description here

I tried to change my .tex file and disable subfig package. However, I couldn't. I use subfloat several times. And since subfloat works on my machine perfectly, I don't want to change my .tex file.

So, what is the best solution to submit my paper?

PS: I downloaded the style file from: http://drucmwebproxy.ieee.org/documents/IEEEtran.zip and using bare_jrnl.tex.

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IEEE doesn't require a TeX file, you need to upload the PDF file and if any the multimedia attachments etc. You should not upload the source files unless you are done with the reviews and sending it to the publication office which is done via Author Gateway portal of IEEE. – percusse Nov 15 '12 at 20:27
You sure? We are trying to submit it to IEEE Cybernetics Part C. The reason I ask you sure is, in the submission panel, you are able to give your .tex file and the system is able to build it. (If your .tex file doesn't give any error like mine.) So, if they don't want my .tex file, why do they have a .tex enabled system like that? – zagy Nov 16 '12 at 15:51
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I have never sent my TeX file to any journal unless it's accepted. I don't know about Cybernetics but I've been involved with IEEE TRO, IEEE TAC, IEEE CST and have never been asked for the source file(one article is going to appear this December). It's sent directly to the reviewers anyhow. I can also ask the same, why do they have a template if they are going to build it for you? It might be a new thing but again IEEE introducing these nonsense instead of fixing their workflow... I digress. – percusse Nov 16 '12 at 16:34

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