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I am using LyX, and I was wondering if there is any ERT Command for automatically inserting wordcount in a document? I am on Windows.

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See the example using TeXcount (included with TeXLive) in Average number of characters in one line –  Fran Nov 26 '12 at 4:02
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Lyx has the same problems LaTeX has to give you a proper word count. The reasons you can read in the question is-there-any-way-to-do-a-correct-word-count-of-a-latex-document (as @cgnieder said in his comment).

So the best way seems to me to prepare a PDF with Lyx and count there the words.

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