I have an example here of an article document using pdflatex, bibtex, and natbib, where the Č character for Čermak isn't sorted in the bibliography correctly. I don't understand why not. Both files are encoded as utf-8 by my editor, and the pdf shows the character correctly. If instead I use {\v C} in the bib file, the sorting is correct (so obviously this is my current workaround, but I don't want to have to do it for all my refs if I don't have to).
\documentclass[10pt,a4paper,final]{article}
\usepackage[utf8]{inputenc}
\usepackage[english]{babel}
\usepackage{natbib}
\begin{document}
See \cite{cermak_heat_1985,ingebritsen_sanford_1999}
\bibliographystyle{apalike}
\bibliography{mwe}
\end{document}
and the bib file:
@BOOK{ingebritsen_sanford_1999,
title = {Groundwater in geologic processes},
publisher = {Cambridge University Press},
year = {1999},
author = {Ingebritsen, S. E. and Sanford, Ward E.},
pages = {341}
}
@ARTICLE{cermak_heat_1985,
author = {Čermak, Vladimír and Jetel, Ján},
title = {Heat flow and ground water movement in the {B}ohemian {C}retaceous {B}asin
({C}zechoslovakia)},
journal = {Journal of Geodynamics},
year = {1985},
volume = {4},
pages = {285--303},
number = {1–4},
}
.bibfiles are full of{\noopsort{ZZZ}}{\v Z}ivanovi{\'c}... a little trick which sortsŽ"correctly", i.e. not asZ. (\noopsortis of course defined as\providecommand{\noopsort}[1]{}.) I'm also switching bo biblatex/biber as soon as I have the time to go through my.bibfiles. – Sašo Živanović Feb 21 at 0:56