knitr is an R package for dynamic report generation based on the concept of literate programming.

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16 views

knitr-manual.lyx fails to compile on LyX 2.1.2

My error message gives me the following: An error occurred while running: Rscript --verbose --no-save --no-restore "C:/Program Files (x86)/LyX 2.1/Resources/scripts/lyxknitr.R" ...
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0answers
16 views

Best way to Insert R code into a LyX document

Let's suppose that I have a set of R (3.1.2) scripts that I would like to display in LyX (2.1.2). I could use Program Listings, but I think this looks very unprofessional. I am wondering if anyone can ...
2
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1answer
30 views

Insert knitr (1.9) Chunks From Separate File Into Lyx (2.12) Document

I have a LyX document (report class) called mwe.lyx and I would like to execute the following Rmd chunk called "mwe.Rmd". {r, eval = FALSE, echo = TRUE, cache = FALSE} 2+2 Of course, I can ...
2
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1answer
39 views
+50

How to modify knitr output chunk

I know that it's possible to tweak the output of a knitr code chunk so that it looks the way you want. My problem occurs when using the parskip package. The parskip package adds an extra bit of space ...
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0answers
38 views

Blog publishing / creation from Latex

I have been using Latex for a few years, and have several articles written in Latex. I want to share some of these articles on blogs, and I am very new to the blogging world. Just wondering if there ...
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0answers
21 views

Using xtable with listings package

I am the listings package as suggested by the following solution provided in this question: Getting Sweave code chunks to stay inside page margins? More specifically, I am using the following piece ...
2
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3answers
63 views

What's the best .Rnw editor?

I'm trying to find out what people use for editing .Rnw files. Desirable features are: Auto R code completion Auto LaTeX code completion Cross platform Automatic display of R function documentation ...
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0answers
25 views

Headers and footers created in Fancyhead not shown in PDF (using Knitr)

New to latex and Knitr. I am trying to add headers/footers into a PDF in Knitr (using the xelatex driver). As a first go, I have tried just adding some text into the header and footer as per the ...
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0answers
77 views

Problem using tikzDevice in knitr

I can't seem to get knitr to work with tikzdevice. A simple example: \documentclass{article} \begin{document} <<test, dev='tikz'>>= library(knitr) library(tikzDevice) library(ggplot2) ...
2
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1answer
84 views

knitr: LaTex Longtable spanning several pages with word continued at bottom and caption appears only once in list of tables

I want to have longtable spanning several pages with word continued at right bottom of the table and its caption appearing only one in the list of tables using knitr. Below is my MWE in .Rnw format. ...
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0answers
33 views

How to cleanly post-process PDF compilation in AUCTeX and ESS?

This question is somewhat related to this one, but separate. Thanks to Jan Gleixner's utility, One can obtain synchronization between a source foo.Rnw compiled by knitr and the resultant foo.pdf. ...
1
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1answer
42 views

Auctex evince synchronization problematic with accented characters in file paths

I recently stumbled on this nice problem (bug ?) : I can use evince to visualize foo.pdf output from LaTeX obtained in AUCTeX and Synctex synchronization,as long as none of the files referenced in ...
4
votes
1answer
73 views

Pass a class/package/theme option to R with knitr

I have a beamer document with R chunks, say 'template.Rnw', which I compile with knitr using 'compile PDF' in RStudio. I have defined a theme 'mytheme.sty'. I would like to have an option to the theme ...
0
votes
1answer
118 views

Which software should I use for making high quality graphs? [closed]

I have written a paper in MS-Word. Now, I am converting it into LaTeX. The problem that I am facing is about figures. Some of the figures I have converted using Adobe Illustrator. However, since I ...
1
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0answers
65 views

How can I show a caption, subcaption and source similar to this NY Times style?

I would like to create a LaTeX document that mimics the style used on the NY Times' Upshot Blog (example at NY Times). Here is the desired output: They have these features: A thin gray line ...
2
votes
1answer
65 views

insert figure in sweave using knitr fig.path Version 2

I have a question similar to this post. I am trying to add a .jpg to a .Rnw file (compiling LaTex with RSweave and knitr). I've tried the following without success: ...
1
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0answers
63 views

How to include a .TeX file generated from .Rnw file into a .TeX file which is child of parent .TeX file?

I really need help. Here is the problem: I'm writing my dissertation using a LaTeX template (http://www.latextemplates.com/template/masters-doctoral-thesis). The template is a parent file with ...
2
votes
1answer
90 views

knit() doesn't create .tex file with necessary preamble

I have a question about creating .tex from .Rnw using knitr in Rstudio. I have a test.Rnw file while looks like the following: \input{report_preamble_en.tex} \title{test} \author{author} ...
3
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0answers
130 views

tikz stops drawing into pdf after 20 line segments in plot generated through knitr tikzDevice

Problem If I try to draw a curve generated through knitr using tikzDevice into .pdf only 20 line segments of that curve are drawn and TeXstudio, through which I do it, just leaves message running ...
1
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1answer
88 views

SumatraPDF inverse search for RNW files

I'm using TexStudio to edit my rnw files. I setup an inverse search from SumatraPDF to TexStudio using THIS (verbatim) which is a renewed version of THIS. When I double click a text in SumatraPDF it ...
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0answers
94 views

How can I nest a code chunk within an enumerate environment when using R Markdown?

When I attempt to do this using this code: --- title: "Title" author: "Me" date: "31 October 2014" output: pdf_document: includes: in_header: includes.sty --- ...
2
votes
1answer
115 views

Special characters and math-mode in tikz graphics using knitr

This question closely relates to this one: Using '$' in a tikz plot generated by knitr I am able to get tikz graphics using knitr working with either math mode as in this post: Math mode in ...
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0answers
62 views

Force Knitr Figure on same page

I am using Knitr on RStudio. <<glmall, include=TRUE, fig.align='center', fig.cap='Diagnostics plots for full-model with GLM (Poission)', fig.show='asis'>>= par(mfrow=c(2,2)) ...
1
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1answer
46 views

Using geom_segment dashed line has odd behavior when using tikz device

My example is: \documentclass[12pt]{article} \begin{document} <<eg, dev='tikz', size='normalsize', echo=FALSE, message=FALSE, warning=FALSE, sanitize=TRUE>>= require(ggplot2) p1 <- ...
0
votes
1answer
55 views

Using '$' in a tikz plot generated by knitr

My example is: \documentclass[12pt]{article} \begin{document} <<eg, dev='tikz', size='normalsize', echo=FALSE, message=FALSE, warning=FALSE>>= require(ggplot2) ggplot(cars) + ...
6
votes
1answer
2k views

no tex installation detected on RStudio after OS X 10.10 yosemite upgrade

I upgraded my MAC to OS X 10.10 yosemite today. Now, when I run RStudio and try to use Knitr to compile pdf, it says no text installation detected. So, I did the following steps sequentially. ...
0
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0answers
30 views

LaTeX keeps placing floats above section headlines

I followed the accepted answer to the question on how to Start new page with each section but LaTeX still puts a float object on the top of a page, above the section headline. Instead, I want this ...
2
votes
0answers
211 views

Sweave and Knitr Figure Size

I recently made the switch from using Sweave to Knitr in order to gain Knitr's ability to cache R code chunks. So far its been fairly straightforward except for one thing. I cannot seem to find an ...
2
votes
1answer
193 views

How to print a table and figure side-by-side in knitr

I see a lot of posts on putting figures side by side with tables without knitr, and posts about putting tables next to tables and figures next to figures in knitr, but nothing on how to put a figure ...
2
votes
1answer
138 views

row and column specifications in xtable output

Using xtable I am trying to format a table x<- 1:5 y<- 11:15 mytable <- table(x,y) print(xtable(mytable)) Which gives I want to add x and y tag also at the top of the rows and sides
4
votes
1answer
2k views

Knitr and rmarkdown will not add figure captions to the output

I am writing a report on Rmarkdown and knitr using RStudio, and cannot find a way to get figure captions on my document. My code for the chunk where I try to plot is like: ```{r ...
1
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0answers
64 views

Setting LaTeX => PS => PDF in RStudio

I am using RStudio, with knitr, and want to use Lodewyckx's graphicalmodels.sty for graphs. It requires changing output profile to LaTeX to PS to PDF. Can this be done in RStudio still using knitr?
3
votes
2answers
198 views

knitr sanitises the % marker for LaTex comments and they show up in the final document

I am writing a knitr document using xtable to get my tables. Xtable inserts by default a comment saying: "latex table generated in R 3.1.0 by stable 1.7-3 package % Thu Sep 18 14:19:21 2014" This ...
1
vote
1answer
45 views

fragile/verbatim R code inside probsoln when using an exterior Rnw file for the data sets

A follow-up on this question about using R code inside the environments used in probsoln package. If you uncomment out the section below and define the problem within the main Rnw file, the R code is ...
2
votes
1answer
810 views

No TeX installation detected. Please install TeX before compiling - RStudio Knitr on Mac [closed]

I have tried to reinstall the MacTex twice. I even reinstall R and RStudio. Nothing could cure this problem. Please Help me, I'm in middle of my thesis and I need to use Knitr and RStudio is only easy ...
1
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0answers
135 views

Best practice for ggplot transparency in pdf figures

I lost a couple of hours because of few transparent figures which Adobe Professional couldn't flatten to print (it crashed in the process). I wonder if there's any trick to produce PDF figures with ...
2
votes
0answers
37 views

Use of environ package with knitr

I'm working on a knitr document and trying to place knitr output inside of a new environment defined using the environ package. The example below illustrates the problem. With a traditional LaTeX ...
1
vote
1answer
45 views

Justifying the output of toLatex function of utils R package

Using utils::toLatex(sessionInfo()) in .Rnw we can get R Session Info to put in LaTeX. I would highly appreciate if someone guide me to fully justify the output of utils::toLatex(sessionInfo()). ...
1
vote
1answer
53 views

How to 'Go to Source' for a .Rnw file with knitr on TexStudio

So, I am TeXStudio and R on Windows 8 and have configured with knitr as follows: "C:\Program Files\R\R-3.0.3\bin\Rscript" -e "library(knitr, lib.loc='C:/Users/User/Documents/R/win-library/3.0'); ...
5
votes
1answer
134 views

minitoc package adds extra page when used with float and lastpage packages

The minitoc package adds extra page when used with float and lastpage packages. I figured out that this problem can be resolved by loading minitoc package before float and lastpage packages. In LyX ...
2
votes
1answer
90 views

Avoid R output leaking into LaTeX with ggnet

Please consider the following MWE which I compile into a .tex document via knitr \documentclass{article} \begin{document} <<echo=FALSE, message=FALSE, warning=FALSE>>= library(igraph) ...
0
votes
0answers
64 views

Problem with in-text figure references in APA-style manuscript with Knitr

I'm having trouble getting a Knitr documents figure references to work in an APA style manuscript. I have looked around, but I haven't seen anything that references this problem specifically. When ...
3
votes
1answer
222 views

R Chunk Code within Enumeration Environment with knitr in LyX

I need R Chunk Code within Enumeration Environment in Rnw file. The following .Rnw document works fine. \documentclass{article} \begin{document} \begin{enumerate} \item The quick brown fox jumps ...
1
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0answers
148 views

Control stargazer table output in combination with mathpazo and siunitx

I like the idea to control all my numeric outputs with the smallest number possible of packages. I use mathpazo to control my fonts and siunitx to control formatting. Yet when I knit a LaTeX table ...
2
votes
0answers
102 views

knitr: Several figures with subcaptions, alignment issues

Here is a minimal working example: \documentclass{article} \usepackage{subfig} \begin{document} <<echo=FALSE,out.width="0.49\\linewidth",fig.show="hold",fig.align="center",fig.cap="Some ...
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0answers
93 views

Knitr and numbers

I return to a question, which is few months old and then maybe not yet the best practice around. I use the siunitx package in my documents along with knitr to compile my R chunks. As far as I ...
3
votes
0answers
87 views

Sub-figures in multiple pages but with one figure caption and showing “continued on next page”

The below code (together with Knitr package in R) creates figures on 3 pages under one caption of "Figure 1: Lots of figure". What I want to have is something like "footer" underneath figures in ...
3
votes
1answer
127 views

Memory issue when producing dense TikZ figure (14500 points scatterplot) with knitr

I have a series of plots in my document which are correctly drawn by knitr with dev=tikz. Yet figure number 7, which is much more dense than the others in terms of data points, foo, doesn't: label: ...
1
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0answers
78 views

caption above figure using knitr

This is a question originally asked on stackoverflow, but it seems to receive no attention and answers there. Since it's related to latex, I'm posting it also here hoping to receive some hints. I ...
1
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1answer
136 views

Cross-referencing tables generated by xtable

I'd like to cross-reference a table that I generated with xtable in R. I cannot able to. Here is what I did: \documentclass{article} \begin{document} Look at \ref{tab:mytable}. ...