R is an open source programming language and software environment for statistical computing and graphics. It is an implementation of the S programming language combined with lexical scoping semantics inspired by Scheme.
3
votes
1answer
202 views
knitr problem after update to R 3.0.0
I just updated R to 3.0.0. I couldn't compile PDF from my .Rnw file, which I could do with R 2.15. Here is the error I got:
! Undefined control sequence.
l.192 \SweaveOpts
...
3
votes
1answer
279 views
Error when using equations and mathescape in source codes using the listings package
I want to write equations within source code that i formatted with the listings package. Therefore I use mathescape=true.
The strange thing is, that it only works when I change the language of my ...
3
votes
1answer
198 views
number separator formatting with ragged right positioning using siunitx, R, Hmisc::latex
I found Boris's suggestion to use siunitx to achieve number formatting in Hmisc::latex tables to almost be exactly what I was looking for:
R, Sweave, Hmisc: pretty-print numbers
However, if you look ...
3
votes
1answer
160 views
LaTeX “command” /incantation for R
I am using the tufte-handout class in LaTeX and I want to refer to R using the "correct" sans-serif font. I am currently using
\newcommand{\R}{ {\bf \sffamily R } }
used as ...
... function in ...
3
votes
1answer
259 views
R listings operator partially in bold
I am using listings to display R code. The matrix multiplication operator shows up partially bold, something like this: "\%\textbf{*\%}". If I separate the * and the %, the second % is not in bold.
I ...
3
votes
1answer
494 views
Using tabularx package with xtable package in R
I am trying to solve the problem of having a latex table (produced using the xtable from R, then combined into a tex file using Sweave), exceeding the margins of my LaTeX document.
I found that one ...
3
votes
1answer
178 views
How use LaTeX counters to label knitr code chunks?
Imagine one has the LaTeX environments Example and Solution defined from the theorem environment. I have several Examples in numerous child documents which make up a book. LaTeX will automagically ...
2
votes
2answers
863 views
Missing character: There is no ? in font cmr12!
I'm not quite sure how to diagnose this issue. This is what I see in my log file. However, there are no "?" symbols in my work.
FWIW, Here's my preamble:
\documentclass[12pt]{article}
...
2
votes
2answers
261 views
Fedora manual installation and dependencies
Following answers on this website (like: How to use TeX Live on Fedora 17? and Manually installed TexLive on Fedora 16 )
I installed texlive manually on fedora and it works flawlessly.
The problem I ...
2
votes
1answer
197 views
Adding a knitr table from R into a \pgfplotstableread statement
I'm trying to get a table from R into a pgfplotstable to edit for printing.
the r code is
\documentclass{article}
\usepackage{pgfplotstable}
\begin{document}
\pgfplotstableread[format=inline,row ...
2
votes
1answer
263 views
Program Tikz in Beamer
The attached .Rnw-code produces two similar slides, but with different texts and different arrow positions. I wrote both slides manually, but because I need to produce hundreds of similar slides, I ...
2
votes
1answer
47 views
Controlling the size of tables produced from the R functions tabular() and latex()
I'll state up front that I'm not absolutely certain whether this question is more appropriate for CrossValidated or for this site. However, since I've seen several questions about the latex() command ...
2
votes
1answer
487 views
Sweave only produces NAs when using Umlauts.
I have a problem with Sweave. As soon as I use any mutated vowels/Umlauts (ü, ä, etc.) Sweave produces an NA in the document although it worked before. I don't know what to do, so any help would be ...
2
votes
1answer
344 views
Problem in StatWeave
I visited http://www.stat.uiowa.edu/~rlenth/StatWeave/ and installed StatWeave according to the instructions. But my problem is that there are no Step by Step instructions given in the manual, and ...
2
votes
1answer
64 views
PDFLaTeX produces black boxes after executing Sweave
There is the following code
\documentclass[a4paper]{article}
\begin{document}
hey there
<<>>=
1+1
@
\end{document}
I saved the example.Rnw in my home directory an ...
2
votes
1answer
115 views
Bold font problem while using Russian fonts
This refers to my previous question
not able to write bold characters using textbf
I installed the cm-extra font package but still there is a problem with boldface due to ...
2
votes
1answer
333 views
pgfSweave() results in texi2dvi error “Missing \endcsname inserted”
When running pgfSweave using a file with the following sample code:
\documentclass[letter]{article}
\begin{document}
In this example we embed parts of the examples from the
\texttt{kruskal.test} ...
2
votes
1answer
756 views
Wide table problem when generating PDF
I have a LaTeX wide table generated from a data frame in R using xtable, but when the PDF is created not all the data is shown, just a part of it, and the other part is hidden on the right of the PDF. ...
2
votes
1answer
62 views
How to put R code into a parameter of a newcommand?
I would like to put R code into a parameter of a newcommand in LaTeX. To do it, I make the following:
%Define the newcommand:
\newcommand\solution[1]{\sf #1}
%Then, after the \begin{document}, I ...
2
votes
0answers
58 views
Long and rescaled xtable
Is there a way to use scalebox along with tabular.environment='longtable' when printing a long and wide xtable?
When I give both of them I get an error:
Running xelatex.exe on my_file.tex...failed
2
votes
2answers
128 views
Modifying the latex code from tabular() in r so that output is not cut off and is displayed properly?
I am using the r function tabular() to produce tables that I can turn into pdfs. The output looks fine, except for some of the tables I am producing. When I compile the pdfs, the table is cutoff on ...
2
votes
0answers
65 views
Highlight R chunks in a Knitr document when working in Kile
When working on a knitr document in kile I can get highlights for the LaTeX parts of the document by adding the *.Rnw file extension in the Modes & Filetypes tab under Open/save configuration ...
2
votes
0answers
91 views
Sweave Float environment over 2 pages
I have a bit of Sweave code as such:
<<label = Example1, echo= true>>=
//Bunch of R Code
@
I've tried putting it in my own float environment like so
\newfloat{rcode}{h!}{rcode}
...
1
vote
1answer
484 views
Reducing R figure sizes in lyx?
I am using LyX with the Sweave module to generate some R figures within a document. I can't seem to get the figures to be smaller, and they tend to take up half a page which is far too large.
I have ...
1
vote
1answer
781 views
Caption for longtable in Sweave
I'm using the following code in .Rnw file to generate a longtable
<<label = tabggplot2df, echo = FALSE, results = tex >>=
print(
xtable(
x = ggplot2df
, caption = ...
1
vote
1answer
78 views
Trying to include R Code with listings package
I was trying to include some R Code in a simple LaTeX document, but for some reason I could not do it. I put the R Code in the same directory (I also tried putting the full directory for my R Code) of ...
1
vote
2answers
87 views
Sweave documents: saving output for later use
I am fairly new to the idea of sweave documents. My document is a .Rnw file containing LaTeX code and R code. Part of my R code is computationally intensive and delays the compilation of my .Rnw ...
1
vote
1answer
118 views
Explain Soutput Schunk -block when switched from article to scrreprt
When I zwitched from article to \documentclass[fontsize=2pt]{scrreprt}, I am getting around the xtable -things:
\begin{Schunk}
\begin{Soutput}
...
\end{Schunk}
\end{Soutput}
Trial (code here)
$ R ...
1
vote
1answer
67 views
Sweave: How to remove horizontal space in Soutput environments?
As the following example shows, there is a horizontal space added in the Soutput environment. This leads to a non-left-aligned output (see the output of rnorm(). I found that this space already exists ...
1
vote
1answer
157 views
How to obtain Sweave(l) listings with rounded corners?
I downloaded the Sweavel.sty-File from here:
http://biostat.mc.vanderbilt.edu/wiki/pub/Main/SweaveTemplate/Sweavel.sty
Now, for a modern look, I would like to produce rounded corners in the R code ...
1
vote
1answer
257 views
Producing figures in PDF and PNG format with TikZDevice and pgfSweave in Sweave
I use the following Sweave template to get R output into LaTeX.
\documentclass[a4paper]{article}
\SweaveOpts{pdf=TRUE, png=FALSE, eps=FALSE, echo=FALSE, prefix=FALSE, width=6, height=6, res=300}
...
1
vote
1answer
188 views
Some Literate tool to create fast Mind maps in RSweaveLatex?
I am looking for literate tools for mind-map-generation that would work nicely with RSweaveLatex. It is possible that there is no need for tools such as Labyrithm (which is apparently broken, at least ...
1
vote
1answer
508 views
Size of Sweave Output
I am very new to LaTeX and Sweave, and I am just playing around with getting some output. That said, the "output" I am getting is very large in size (physcially on the page). For example, one output ...
1
vote
0answers
63 views
Doodle on top of Sweave output
It might not be possible to do this, but I was wondering if there is a way to doodle on top of the LaTeX output, or in my case on top of Sweave output.
See example underneath!!
...
1
vote
0answers
156 views
knitr : Figure are not appearing at the correct place
I'm trying to use knitr while learning LaTeX but all my figures are placed at a seemingly random place.
It's driving me insane. Any ideas?
Example Input
PDF Output
I tried reinstalling TeX Live ...
1
vote
0answers
178 views
R: Prettify xtable() output for printing a matrix or dataframe [closed]
Following a suggestion, this is a repost from stackoverflow. I am trying to print out this table from R using xtable(). The default output is ugly. Is it possible to embed latex code within xtable() ...
0
votes
2answers
130 views
How to remove name while including image in LaTeX?
I am including an image in R and found the name of the image file appearing with the image:
name<-c("A.pdf","B.pdf","C.pdf","D.pdf")
<<echo=FALSE,results=tex>>=
for (i in 1:4)
...
0
votes
1answer
373 views
What's wrong with this Sweave Document
Every time I run the code below, it runs without error. It is only when I try to sweave the output in the last frame requested does it fail. What's more confusing to a LaTeX/Sweaving newbie like ...
0
votes
1answer
110 views
Making extra produced schunk globally invisible in Sweave
I'm using ASREML-R for data analysis. When I fit the model in ASREML-R, it produces some information regarding the model like this
dat <- data.frame(y=rnorm(20),x=seq(1,20))
ex.asr <- asreml(y ...
0
votes
1answer
439 views
How to disable null device while usin dev.off() in R and latex?
How to disable message null device when using R and latex.
<<echo=FALSE ,results=tex>>=
data<-read.table("test",sep="\t",header=TRUE,check.names=FALSE)
...
0
votes
1answer
73 views
Question mark in knitr code getting quote marks [closed]
I'm trying to use question marks in a code block using knitr, but in the compiled pdf always puts quotes around it, so, for example
<<helpCode, eval=FALSE>>=
?rnorm
@
comes out as
...
0
votes
1answer
440 views
exporting R ggplot2 plots to LaTex
I usually export ggplot2 plots from R using "Save As" PDF and works fine, then I use \includegraphics from LaTex to include the fig. The problem is that it seems that the amount of data in these ...
0
votes
1answer
243 views
Avoid non-breaking-space characters printing as tildes when using texi2dvi in R
I'm using the Sweave toolchain in R to generate tex files from Sweave files as part of an R package. I use the R command:
$(RSCRIPT) -e "tools::texi2dvi( 'file.tex', pdf = TRUE, clean = FALSE ...
0
votes
1answer
205 views
DB dump into LaTeX with Python and R?
I have quite a large index. I am planning to create a full-blown DB for it and later export the information to LaTeX. I am comfortable with R and Python so I would like to work with them but I feel ...
0
votes
1answer
142 views
xtable in pgfSweave (on lyx) : output=tex is invalid?
Many tutorials online say that to include a table in Sweave one should write something like this:
<<output=tex>>=
require(xtable)
stuff
xtable(stuff)
@
That makes sense. But when I do ...
0
votes
2answers
1k views
generate a PDF containing R output inside latex table
I wrote a script that generates 4 variables from 2 for loops, each one of them contain a big number of data. I want to place these variables inside a data frame and then create a latex table so I can ...
0
votes
0answers
65 views
Using Notepad++ with MiKTeX and R (sweave) on Windows
This link provides a great tutorial on Using Notepad++ with MiKTeX on Windows I wish to extend this to run a combinationR and LaTeX using Notepad++ (sweave). I ran run R from Notepad++. I can run ...
0
votes
0answers
56 views
does not produce output table in pdf using Sweave and xtable
If I try to get 3 tables I only get the first two. I'm running out of ideas here:
<<test.2m,echo=false,results=tex>>=
library(xtable)
a = ...
0
votes
0answers
41 views
Blackened window instead of plot generated with Sweave [closed]
I'm trying to generate two plots side by side using Sweave and the subcaption package.
The thing is, that in the created pdf I get only blackened windows instead of plots (in the separate pdf files ...
0
votes
0answers
85 views
Converting R input into tex [closed]
During my work with R on Markov chains, I have to handle big matrices, which I want to transfer into LaTeX documents. Is there an easy method to do that without changing every single "," in my R-code ...
