Sweave is a function in the statistical programming language R that enables integration of R code into LaTeX or LyX documents.

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4
votes
1answer
541 views

Color first row in a xtable generated table

I am trying to color the FIRST row of my table. But if I add \rowcolor[gray]{0.95} to the FIRST row the colored row will be the SECOND. Indeed it is quite straight forward to modify from the second ...
1
vote
0answers
170 views

Define style of xtable

I want to set the style of tables built with xtable by looping on multiple dataframe. I then look for some macro so to set the style in the preamble and not directly within the tabular environment. ...
2
votes
1answer
360 views

How to loop over R objects OUT OF chunks

I want to typeset with TeX a report based on data from an R object (dataframe). The idea is to print a nice TeX table from each line of a R dataframe. Something like \begin{tabular}{ l c r } A1 ...
1
vote
0answers
165 views

How to keep title, table and caption together in 1 page? [closed]

I have one table which is dynamic (number of rows varies from 2 to 20). This table has title and caption. But I need title, table and caption all 3 should be in the same page i.e. need to avoid title ...
8
votes
1answer
403 views

Is it possible to get Sweave/knitr in RStudio to output the .tex file without typesetting it?

I would like to know if it is possible to tell Sweave or knitr in RStudio to create the .tex file without trying to typeset it. I want to be able to run my .Rnw file and produce a .tex file which I ...
6
votes
2answers
2k views

longtable misplaced noalign

Question Why am I getting multiple misplaced \noalign errors? Reproducible example \documentclass{scrartcl} \usepackage{longtable} \usepackage{booktabs} \begin{document} \section{Table test} ...
2
votes
0answers
109 views

Can a TeXShop engine set the #PDFPATH#?

I have written an engine to run Sweave (a preprocessor) from TeXShop. It works fine on simple projects. For complicated projects (e.g. books), I might want to run the preprocessor on a chapter (e.g. ...
3
votes
1answer
135 views

Making comments stand out when using Sweave and R

Is there any way to bold or highlight all comments when using Sweave? Maybe a command to make all lines starting with # be bolded? <<>>= # I want this to be bold automatically @
2
votes
0answers
145 views

Sweave (using R Studio) with AEA class

Apologies for the newbie question! I've been having some problems trying to get a minimal working example using Sweave with a the AEA document class. My minimal example works as a .tex file, but the ...
0
votes
1answer
862 views

Special characters in knitr generated figure caption

I would like to pass special characters and formatting with the knitr generated captions. I am trying to understand two things: 1) Is it possible to pass LaTeX syntax through the caption? 2) How ...
5
votes
1answer
63 views

How can I figure out which parameters are passed to xelatex by Rstudio?

I'm using Rstudio to create a nice pdf report using sweave and xelatex. I can process the sweave file in Rstudio, but I'm trying to wrap this into a script, so I need to figure out what parameters are ...
0
votes
0answers
28 views

How to prevent plots being printed out of document's sections? [duplicate]

I am preparing a document using knitr in which I have multiple charts within two or more sections. The majority of the plots is printed at the end of the document but I would like them to stay within ...
5
votes
1answer
541 views

Selectively suppress caption numbering when using xtable

I have a chunk of code which is producing table output using Xtable and I would like to suppress the table numbering. I know I can suppress numbering using \caption* outside of Xtable but I'm stumped ...
9
votes
2answers
262 views

What tools are there to make LaTeX more viable at work

I do data mining in R, Python and various object oriented languages. I like using LaTeX to present my results; either to myself (i.e. use them for result interpretation/analysis) or to send to ...
0
votes
2answers
1k views

Fit to landscape longtable generated with xtable and sweave

I read many TEX questions/answers on fitting a table to your page width, but cannot figure out how to do apply it in my context (using xtable/sweave). Everything that I tried (using adjustbox, tabu) ...
2
votes
1answer
762 views

How to debug if Knitr quits unexpectedly when composing tikz figure

I have a .Rnw file that Knitr used to compile perfectly fine until my backend dataset changed. Probably then the size of the graph changed also. For reasons I don't understand knitr now stops abruptly ...
3
votes
1answer
1k views

Sweave on Windows 7 - using Texmaker

So I've tried to configue Sweave on Texmaker following these instructions: http://arts.uwaterloo.ca/~tmparker/722/hw/Setup_Sweave_in_Texmaker.pdf When I go to run this example: ...
3
votes
1answer
259 views

knitr compiling time with large datasets

I noticed that with a large dataset knitr takes an unexpected long time to compile my document: about 23 minutes from when knitr completes the last chunk to when it writes the .tex. I don't understand ...
1
vote
0answers
93 views

Jump from PDF line into .Rnw (with Skim)

I have a LaTeX document saved as .Rnw which I compile with Sweave to get a .tex document and finally-once compiled with LaTeX, a PDF. Now with Skim I can jump from a line in the PDF back into the ...
2
votes
1answer
1k views

Plots are not appearing in PDF after using Sweave

In general, Sweave is making great looking PDFs for me. However, when I plot a histogram, it is not appearing in my PDF. I have a bare bones Sweave document as follows. I can't seem to isolate ...
2
votes
2answers
1k views

KILE Sweave Error - “Cannot open log file; did you run LaTeX?”

I am using Sweave to generate a pdf from a .Rnw file. I added a new build configuration in Kile using Kile's build-configuration settings. Settings > Tools > Build OS is Windows 7. How do I ...
2
votes
1answer
148 views

How to escape inline R command to avoid issue with “while-typing” spelling check

I have a problem with my text editor Aquamacs Emacs (GNU Emacs 23.4.1) when use it with \Sexpr to print inline the output from R functions. The problem results when the R command includes special ...
9
votes
1answer
2k views

How to build Knitr document from the command line

I would like to compile a knitr document from the command line. With Sweave, the sequence R CMD Sweave my_sweave_file.Rnw latex my_sweave_file.tex latex my_sweave_file.tex dvips my_sweave_file.dvi ...
0
votes
1answer
112 views

Insert Sweave into LaTeX

I have already done most of my final paper using normal LaTeX and inserted a table using pgfsplotstable. However, I find it particularly difficult to edit/ style the table using this packages syntax. ...
4
votes
1answer
239 views

Repeating section with identical structure and different content

I would like to repeat identical subsection format with different contents. For example \documentclass{article} \usepackage{graphicx} \begin{document} \section{Intro} \subsection{A-text} ...
1
vote
1answer
489 views

LaTeX Suite Autocompletion Feature Not working With Rnw file

I have been a great fan of Vim with its awesome Vim-latex suite providing extremely useful keybindings and autocompletion features. Then I installed vim-r-plugin and opened a .Rnw Sweave file. While ...
2
votes
1answer
520 views

How to add horizontal lines within a table created by Hmisc::latex()?

lets suppose we have a table given in R and use the function latex() from the R package Hmisc to include the table in a Sweave (or knitr) document. My question is: Is there a way to add horizontal ...
11
votes
2answers
2k views

Building TeX file from knitr Rnw as child of larger parent TeX file to use R objects and output

Here's my general problem: I'm writing my dissertation using a LaTeX template (http://www.latextemplates.com/template/masters-doctoral-thesis). The template is a parent file with multiple chapters as ...
2
votes
1answer
179 views

How can one make RStudio pass options to Sweave()?

I'm trying to use a UTF-8 encoded .Rnw file in combination with xelatex in RStudio. Since xelatex uses native UTF-8 support i cannot use \usepackage[utf8]{inputenc} in my .Rnw file, which would ...
3
votes
1answer
391 views

How can I center a Sweave verbatim chunk?

I have a very simple sweave chunk with two lines, like this: <<results=verbatim>>== quantile(foo$bar) @ How can I center this element? I've tried embracing the chunk with \begin{center} ...
1
vote
0answers
3k views

Fatal error occurred, no output PDF file produced in php file [closed]

We are using following code in .php script for generate .pdf file. $result1 = exec("R CMD Sweave /var/www/html/r/r_latex_sweave.Rnw"); $result2 = exec("pdflatex /var/www/html/r/r_latex_sweave.tex"); ...
0
votes
0answers
2k views

Fatal error occurred, no output PDF file produced [duplicate]

we are executing following code from .php file. $result1 = shell_exec("R CMD Sweave /var/www/html/r/r_latex_sweave.Rnw"); $result2 = shell_exec("pdflatex /var/www/html/r/r_latex_sweave.tex"); But, ...
1
vote
1answer
341 views

Sweave function in r fails with Error (option: results seems causing the issue)

I got the below function from Prof's website: http://diskworld.wharton.upenn.edu/~foster/teaching/471/sweave-intro.pdf The said function is meant for converting sweave (.Rnw) into PDF. But when i ...
3
votes
1answer
1k views

How can I insert Sweave code inside a Beamer block?

I'm currently trying to automate a report-generating routine in R, and I imagine the best way to try this is through Sweave and beamerposter. The report should have one page with several sections in ...
3
votes
1answer
5k views

Reinstalling LaTeX in Ubuntu 13.04 [duplicate]

The LaTeX in my system cannot support Sweave compilation to pdflatex, it warns for missing .sty files. I want to clean my system and reinstall a more complete LaTeX. What is the better way for doing ...
3
votes
1answer
338 views

Is there a PythonTex equivalent to \Sexpr{} in R?

I started to use the excellent PythonTex package to write reproducible reports but can't seem to get it to evaluate Python code inside a LaTeX command. R has Sweave & knitr which provide the ...
2
votes
1answer
159 views

Sweave.sty causing error in verbatim environment?

folks-- The following throws an error, shown below \documentclass{book} \usepackage{Sweave} \begin{document} \begin{verbatim} data ds; infile 'dir_location\filename.csv" ...
3
votes
1answer
419 views

Sweave outputs gibberish

I have this .Rnw file: \documentclass{article} \begin{document} <<>>= data(cars) fit <- lm(cars$speed~cars$dist) summary(fit) @ \end{document} I am using RStudio to build the PDF ...
2
votes
2answers
2k views

Installing Sweave for Miktex 2.9 on Windows 7

I've been looking everywhere, but my computer (Windows 7) just won't install the Sweave.sty package for Miktex 2.9. I tried to put it in a folder respecting the TDS standard, and then to install it, ...
2
votes
1answer
930 views

insert figure in sweave using knitr fig.path

I'm trying to insert a figure using Sweave which is located in the path C:\Users\eccehomo\Documents\mi\fig1.png. I'm using the package knitrwhich has a function called fig.pathbut I'm getting many ...
1
vote
1answer
194 views

How to print a system of linear equations in matrix form using sweave?

I would like to print a system of linear equations, a right bracket, a right arrow and finally the output of the system (x). Something like Ax = b } ---> x. It is hard for me to find the right way of ...
1
vote
0answers
44 views

Citations not working in Sweave [duplicate]

I am trying to run this Sweave code in R. \documentclass{article} \begin{document} \SweaveOpts{concordance=TRUE} \section{Section} I am citing \cite{ftest}. \begin{thebibliography}{9} ...
2
votes
1answer
697 views

\Sexpr shows only one value from a vector with two elements in sweave

I can't get the two elements of the vector using: <<>>= z=c(1,2) @ \Sexpr{z} I have googled a lot but don't understand why I get just the first element.
3
votes
1answer
212 views

Why could \usepackage{Sweave} be affecting my graphics scaling?

I'm using Sweave to produce a large, multi part academic thesis. I had neglected to specify \usepackage{Sweave} in my preamble, but everything was working fine until I added some verbatim output from ...
2
votes
1answer
266 views

Doodle on top of Sweave output

It might not be possible to do this, but I was wondering if there is a way to doodle on top of the LaTeX output, or in my case on top of Sweave output. See example underneath!! ...
1
vote
0answers
73 views

Figure positioning in Sweave [duplicate]

I starting learning Sweave today, and I am having difficulty positioning my figures correctly. I am finding that when I use the figure environment, the position of the figure doesn't correspond to its ...
1
vote
1answer
123 views

Count the characters in a section and check against range

I want to count the number of characters within a section and then display if that value is below, in, or above the limit. I have grabbed the code from Dynamically count and return number of words in ...
2
votes
1answer
201 views

PDFLaTeX produces black boxes after executing Sweave

There is the following code \documentclass[a4paper]{article} \begin{document} hey there <<>>= 1+1 @ \end{document} I saved the example.Rnw in my home directory an ...
0
votes
2answers
754 views

Sweave: run a bat file in Windows 7

When I run a RNW file inside RStudio compilation is working. But when I try to run the same RNW file through a BAT file, compilation is not working. I am a Win 7 user, using MixTex... Actually my ...
5
votes
1answer
209 views

How to check image exists or not?

I'm working on Sweave and using includegraphics for include image in report dynamically. Pseudocode: <<> for ( i to 100) # run loop 1 to 100 { ...