Sweave is a function in the statistical programming language R that enables integration of R code into LaTeX or LyX documents.

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Sweave.sty Rd.sty on texlive 2011 (OpenSUSE 12.1)

I am trying to make Sweave.sty and Rd.sty globally available on my system. After reading related posts on StackExchange, I changed texmf.cnf, so that kpsewhich --expand-var='$TEXMF' results in ...
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1answer
222 views

Explain Soutput Schunk -block when switched from article to scrreprt

When I zwitched from article to \documentclass[fontsize=2pt]{scrreprt}, I am getting around the xtable -things: \begin{Schunk} \begin{Soutput} ... \end{Schunk} \end{Soutput} Trial (code here) $ R ...
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6answers
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How to comment in an R-chunk?

I'm quite new to both R and LaTeX, but I'm trying to work with both, using Sweave. I know you can comment in R using # and in LaTeX by using %. However, when I write a #comment in an R-chunk (between ...
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3answers
570 views

Sweave Multiple Chapters

I am writing a large Sweave document that will be broken up into many chapters with the final output being a large pdf of everything and an individual pdf for each chapter (with the same page and ...
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1answer
142 views

Using toggles from etoolbox to switch Sweave Schunks of code on and off

I would like to use the toggles from etoolbox to direct Sweave to evaluate or not evaluate chunks of code. Example: \newtoggle{FirstTime} \toggletrue{FirstTime} %\togglefalse{FirstTime} ...
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2answers
277 views

LaTeX/Sweave - How to reproduce code blocks in an appendix?

I hope this is in the right place. For my statistics assignments, I do the computation inline with Sweave, like so: \begin{itemize} \item[Problem 1] <<label=block1,eval=T,echo=F>> ...
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1answer
1k views

How to disable null device while usin dev.off() in R and latex?

How to disable message null device when using R and latex. <<echo=FALSE ,results=tex>>= data<-read.table("test",sep="\t",header=TRUE,check.names=FALSE) ...
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1answer
441 views

Adjust line numbers in error messages

Question Is there any way I can alter the line-numbers reported by TeX and friends in error messages? This is almost an identical question to Add offset to line number (in error message) when using ...
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3answers
3k views

LaTeX techniques and templates for writing a book [closed]

I am about to write a couple of books using LaTeX. I am fairly used to producing small LaTeX articles using Sweave and R, but I have never written a book using LaTeX and I am not conversant with the ...
2
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1answer
633 views

Yasnippet, Sweave: How to make snippets work from .Rnw files?

I use yasnippet's defined in ~/.emacs.d/plugins/yasnippet-0.6.1c/snippets/text-mode/latex-mode to insert small pieces of code when working with LaTeX. I recently started to use Sweave and therefore ...
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1answer
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LaTeX Error: Illegal character in array arg using apsrtable in R

I am using sweave in R-Studio and am attempting to use the R package apsrtable. Both the model objects I am passing apsrtable are lm objects, and I get the error illegal character in array arg ...
2
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1answer
1k views

Reducing R figure sizes in lyx?

I am using LyX with the Sweave module to generate some R figures within a document. I can't seem to get the figures to be smaller, and they tend to take up half a page which is far too large. I have ...
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2answers
2k views

R, Sweave, Hmisc: pretty-print numbers

I'm creating a LaTeX tables based on a matrix in R using the 'latex' function of the Hmisc package. dat = matrix(c(1000, 100, 10000, 10000), 2) latex(dat, file='') This works (as expected) ...
4
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1answer
856 views

Making LaTeX documents with Hebrew? (in Sweave + RStudio)

I would like to write in Hebrew in an .Rnw file, and use it with RStudio. Searching around, I found an example for using Hebrew in LaTeX in general: Numbers, punctuation and parenthesis reversed in ...
0
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1answer
702 views

LaTeX, Sweave: How to get \upshape (or \rm) in lines which display code?

How can get an upshape font (\rm) [with Sweave] in lines which display code (such as 1:300 + runif(300)) below? I tried a couple of things (I found fontshape=n online), but they did not influence the ...
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2answers
2k views

Missing character: There is no ? in font cmr12!

I'm not quite sure how to diagnose this issue. This is what I see in my log file. However, there are no "?" symbols in my work. FWIW, Here's my preamble: \documentclass[12pt]{article} ...
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0answers
344 views

Can I import existing .Rnw Sweave file into LyX? [closed]

I am trying to import an existing Sweave .Rnw file into LyX. I wonder whether LyX is capable of doing it? My LyX version is 2.02 and I can use its Sweave module with no problem. I find out it does ...
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4answers
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Dynamically count and return number of words in a section

I am writing a proposal for which it is required to give the number of words of the main section in the proposal itself. I found this answer on how I can get a word count on a LaTeX document: Is ...
2
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1answer
438 views

pgfSweave() results in texi2dvi error “Missing \endcsname inserted”

When running pgfSweave using a file with the following sample code: \documentclass[letter]{article} \begin{document} In this example we embed parts of the examples from the \texttt{kruskal.test} ...
3
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3answers
857 views

Table Limit: Sweave

I'm running into an issue. It seems that when I try to output more than 17 or 18 tables to a pdf document the remaining tables are ignored. When I split them across multiple Rnw files, there is no ...
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3answers
8k views

Using fancyhdr to create an image based header and footer

I'm trying to generate a latex report (via Sweave and R) where the header of the document is an image that covers everything (including the top/left/right page margin) and the footer covers everything ...
20
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1answer
8k views

Getting Sweave code chunks to stay inside page margins?

Sometimes I get to make an R code chunk (in Sweave) which is longer then the margins of the page. Is there a way to force it to "go to the next line" once that happens? Here is a simple example of ...
2
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1answer
1k views

Caption for longtable in Sweave

I'm using the following code in .Rnw file to generate a longtable <<label = tabggplot2df, echo = FALSE, results = tex >>= print( xtable( x = ggplot2df , caption = ...
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1answer
164 views

Making extra produced schunk globally invisible in Sweave

I'm using ASREML-R for data analysis. When I fit the model in ASREML-R, it produces some information regarding the model like this dat <- data.frame(y=rnorm(20),x=seq(1,20)) ex.asr <- asreml(y ...
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1answer
334 views

Best way to display percentages in Sweave?

What is the best way to display percentages in Sweave? A simple example: The number 4 is \Sexpr{4 / 7} of 7. What is the best way to get the document to display: The number 4 is 57.1% of 7.
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1answer
401 views

Avoid non-breaking-space characters printing as tildes when using texi2dvi in R

I'm using the Sweave toolchain in R to generate tex files from Sweave files as part of an R package. I use the R command: $(RSCRIPT) -e "tools::texi2dvi( 'file.tex', pdf = TRUE, clean = FALSE ...
4
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1answer
1k views

\SweaveInput{…} with UTF-8 encoding?

Some hack here. In ?RweaveLatex manual, I found only paragraph about encoding in UTF-8 but considering Windows users: The use of fancy quotes (see ‘sQuote’) can cause problems when setting R ...
5
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1answer
365 views

Including path diagram in Sweave

I use the following code to do sem analysis and draw path diagram with sem R package. library(sem) R.DHP <- readMoments(diag=FALSE, names=c('ROccAsp', 'REdAsp', 'FOccAsp', ...
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1answer
342 views

Producing figures in PDF and PNG format with TikZDevice and pgfSweave in Sweave

I use the following Sweave template to get R output into LaTeX. \documentclass[a4paper]{article} \SweaveOpts{pdf=TRUE, png=FALSE, eps=FALSE, echo=FALSE, prefix=FALSE, width=6, height=6, res=300} ...
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1answer
230 views

Some Literate tool to create fast Mind maps in RSweaveLatex?

I am looking for literate tools for mind-map-generation that would work nicely with RSweaveLatex. It is possible that there is no need for tools such as Labyrithm (which is apparently broken, at least ...
6
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1answer
2k views

side-by-side xtables in Sweave

I use xtable to manage my tables in Sweave like this <<label=tab1, echo = FALSE, results = tex>>= print(xtable(Table1)) @ <<label=tab2, echo = FALSE, results = tex>>= ...
8
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1answer
426 views

Having trouble with pgfSweave and tikzDevice

On Ben Bolker's advice I started using pgfSweave and tikzDevice. I'm struggling with getting R graphs into LaTeX. This is my code for pgfSweave Rnw file: \documentclass{article} \usepackage{tikz} ...
5
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1answer
488 views

How to input \Sexpr{ as verbatim in Sweave?

Building on my question here: Include Sweave input as verbatim Is there a way to include the term \Sexpr{ in the Sweave document as verbatim. For example, to write: R code can be evaluated inline ...
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Include Sweave input as verbatim

How do I keep Sweave from compiling things in a verbatim environment? For example: \documentclass{article} \begin{document} \begin{verbatim} <<>>= 1+1 @ \end{verbatim} \end{document} ...
5
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1answer
1k views

How to sweave Matlab or Mathematica code into LaTeX.

There is a package called pgfsweave for R. It can sweave R code into a LaTeX document. I found we can gain some advantage from this method. The report document can reproduce. The font in figure ...
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1answer
968 views

StatET & Sweave cannot compile pdf files

I am new to R, Sweave, and LaTeX. I am running StatET with Eclipse 3.7 on a Windows 7 x64 OS. StatET also includes the Sweave add-on, which I use to try and compile a PDF document. I also installed ...
0
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1answer
191 views

xtable in pgfSweave (on lyx) : output=tex is invalid?

Many tutorials online say that to include a table in Sweave one should write something like this: <<output=tex>>= require(xtable) stuff xtable(stuff) @ That makes sense. But when I do ...
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0answers
430 views

Sweave won't create PNG images [closed]

Up to this morning Sweave() was regularly creating images in png format (I used png=T as an argument). At some point Sweave would no longer create any PNG image (this is a problem for me 'cause ...
8
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1answer
861 views

Sweave generating invalid LaTeX

I've encountered a problem when I'm using Sweave to convert an .Rnw file into a .tex file. Sweave is replacing three options from hyperref's \hypersetup block with the value NA. This is the section ...
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2answers
4k views

Tables with multiple panels in LaTeX, R and Sweave

I would like to know what the accepted Sweave/R/LaTeX solution is for producing tables with "panels": multiple parts, which may or may not contain the same columns, combined into one table. The ...
5
votes
4answers
732 views

Auctex TOC with multifile document

I'm writing my PhD thesis with LaTeX-Sweave and I use EMACS with AucTex and ESS. I have a master file (master.tex) and some slave files and my question is about the use of the TOC in the slave files. ...
2
votes
1answer
756 views

Sweave only produces NAs when using Umlauts.

I have a problem with Sweave. As soon as I use any mutated vowels/Umlauts (ü, ä, etc.) Sweave produces an NA in the document although it worked before. I don't know what to do, so any help would be ...
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1answer
276 views

Sweave + sciposter conflict prevents italics in title

After some fooling around, I have determined that when package Sweave is loaded, italics in the title of a sciposter document is ignored (though underline works). I don't know enough to read the ...
5
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1answer
2k views

Difference between \Sexpr and <<>>=

I am new to sweave and learning a lot. For the most part \Sexpr works well for simple variables and also calling R functions. But other times it will fail, I have found that I can get around this ...
3
votes
2answers
600 views

Reduce space between Sinput and Soutput

I'm using Sweave in the book document class, and I'm getting really huge spacing between Sinput and Soutput evironments. \documentclass[11pt]{book} \usepackage{Sweave} \usepackage{boxedminipage} ...
5
votes
2answers
1k views

How to prevent text generated with `Sweave` from running off the right margin?

I am using Sweave to generate output for some R analysis. Some of the code generates long lines that are run off the right margin when the .tex file is compiled. I have pasted an example Schunk ...
3
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2answers
880 views

How to redirect SAS output to LaTeX?

I'm wondering how can the SAS output directly be redirect to LaTeX as we can do by using Sweave with R. Thanks
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1answer
2k views

Sweave, Beamer and ggplot2

There's literally nothing on the internet showing how these work in conjunction with one another. I would really appreciate even the simplest example of a Rnw document that you would run with Sweave() ...
3
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1answer
2k views

What's the best tutorial for beamer, sweave and ggplot2 combined?

I'm looking for the best example presentation publicly available on the Internet that uses beamer, sweave and ggplot2 all at the same time. Ideally it would be the actual example .Rnw file, along with ...
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2answers
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Resize Arrays and Figures in a Sweave document.

How is it possible to resize figures produced via a Sweave script? I tried scalebox and others, but I can't succeed to obtain a figure with an acceptable size in my beamer with direct Sweave output ...