Sweave is a function in the statistical programming language R that enables integration of R code into LaTeX or LyX documents.
19
votes
4answers
861 views
Dynamically count and return number of words in a section
I am writing a proposal for which it is required to give the number of words of the main section in the proposal itself. I found this answer on how I can get a word count on a LaTeX document:
Is ...
12
votes
1answer
3k views
Getting Sweave code chunks to stay inside page margins?
Sometimes I get to make an R code chunk (in Sweave) which is longer then the margins of the page. Is there a way to force it to "go to the next line" once that happens?
Here is a simple example of ...
11
votes
4answers
571 views
Workflow in Sweave: Handling TeX errors
I've been using LaTeX and R for a few years now, but am only now bringing them together via Sweave. As I put the document together, I run my R code in its own session to verify that it works properly, ...
10
votes
2answers
2k views
Tables with multiple panels in LaTeX, R and Sweave
I would like to know what the accepted Sweave/R/LaTeX solution is for producing tables with "panels": multiple parts, which may or may not contain the same columns, combined into one table. The ...
9
votes
3answers
2k views
Using fancyhdr to create an image based header and footer
I'm trying to generate a latex report (via Sweave and R) where the header of the document is an image that covers everything (including the top/left/right page margin) and the footer covers everything ...
9
votes
1answer
948 views
how to colorize syntax using R + Sweave?
I'm writing a LaTeX document using Sweave (a Beamer presentation, really), which weaves R code and LaTeX. Is there a way to make my chunks of code and its output highlighted? I could use listings ...
8
votes
3answers
2k views
LaTeX techniques and templates for writing a book
I am about to write a couple of books using LaTeX. I am fairly used to producing small LaTeX articles using Sweave and R, but I have never written a book using LaTeX and I am not conversant with the ...
8
votes
3answers
660 views
Include Sweave input as verbatim
How do I keep Sweave from compiling things in a verbatim environment? For example:
\documentclass{article}
\begin{document}
\begin{verbatim}
<<>>=
1+1
@
\end{verbatim}
\end{document}
...
8
votes
1answer
346 views
Having trouble with pgfSweave and tikzDevice
On Ben Bolker's advice I started using pgfSweave and tikzDevice. I'm struggling with getting R graphs into LaTeX.
This is my code for pgfSweave Rnw file:
\documentclass{article}
\usepackage{tikz}
...
7
votes
1answer
545 views
Sweave generating invalid LaTeX
I've encountered a problem when I'm using Sweave to convert an .Rnw file into a .tex file. Sweave is replacing three options from hyperref's \hypersetup block with the value NA.
This is the section ...
7
votes
5answers
1k views
How to get correct dimensions for a ggplot2 plot in beamer
I have a beamer presentation made with Sweave that I'm preparing and was wanting to place some ggplot2 graphs in but the aspect ratio does not seem to come out correct. This is what is in my Rnw ...
6
votes
4answers
2k views
Multiple Tables Sweave/Latex
I am very new to LaTeX and Sweave but am excited that it may make my life much simpler when combined with R.
What I am looking to do: Create multiple crosstabs, most likely in a loop. As a result, ...
6
votes
1answer
207 views
Best way to display percentages in Sweave?
What is the best way to display percentages in Sweave?
A simple example:
The number 4 is \Sexpr{4 / 7} of 7.
What is the best way to get the document to display:
The number 4 is 57.1% of 7.
6
votes
1answer
1k views
Sweave, Beamer and ggplot2
There's literally nothing on the internet showing how these work in conjunction with one another. I would really appreciate even the simplest example of a Rnw document that you would run with Sweave() ...
6
votes
1answer
982 views
side-by-side xtables in Sweave
I use xtable to manage my tables in Sweave like this
<<label=tab1, echo = FALSE, results = tex>>=
print(xtable(Table1))
@
<<label=tab2, echo = FALSE, results = tex>>=
...
5
votes
1answer
409 views
Remove\begin{Schunk} \begin{Sinput}
I am using Sweave to produce my tex. In addition I use lstlisting to highlight the source code as below.
\begin{lstlisting}[caption={Computation $\widehat Y_4$ and its ...
5
votes
1answer
166 views
Using Sweave and XeLaTeX
I'm doing a report that is heavy in R but also would like to use system fonts, so I was hoping to be able to use Sweave and XeLaTeX.
My preferred tex editor is TexShop (Mac 10.7), but it seems to ...
5
votes
2answers
674 views
How to prevent text generated with `Sweave` from running off the right margin?
I am using Sweave to generate output for some R analysis. Some of the code generates long lines that are run off the right margin when the .tex file is compiled.
I have pasted an example Schunk ...
5
votes
4answers
867 views
How to comment in an R-chunk?
I'm quite new to both R and LaTeX, but I'm trying to work with both, using Sweave.
I know you can comment in R using # and in LaTeX by using %. However, when I write a #comment in an R-chunk (between ...
5
votes
1answer
115 views
How to check image exists or not?
I'm working on Sweave and using includegraphics for include image in report dynamically.
Pseudocode:
<<>
for ( i to 100) # run loop 1 to 100
{
...
5
votes
1answer
271 views
How to input \Sexpr{ as verbatim in Sweave?
Building on my question here:
Include Sweave input as verbatim
Is there a way to include the term \Sexpr{ in the Sweave document as verbatim. For example, to write:
R code can be evaluated inline ...
5
votes
1answer
919 views
How to sweave Matlab or Mathematica code into LaTeX.
There is a package called pgfsweave for R. It can sweave R code into a LaTeX document. I found we can gain some advantage from this method.
The report document can reproduce.
The font in figure ...
5
votes
1answer
169 views
Passing a variable from TeX to R in Sweave
I know it is possible to use \Sexpr to pass information from an R chunk to LaTeX. For example,
<<echo=F,results=hide>>=
a = 7
@
42 is the answer to 6 x \Sexpr{a}
Is there an ...
5
votes
1answer
185 views
How to randomize content with examdesign package using Sweave
Forgive me in advance if this is a dumb question, or too specific to one package. I've been using examdesign to randomize the order of questions, but I also want to randomly generate the content. I've ...
5
votes
1answer
253 views
Including path diagram in Sweave
I use the following code to do sem analysis and draw path diagram with sem R package.
library(sem)
R.DHP <- readMoments(diag=FALSE, names=c('ROccAsp', 'REdAsp', 'FOccAsp',
...
4
votes
2answers
1k views
R, Sweave, Hmisc: pretty-print numbers
I'm creating a LaTeX tables based on a matrix in R using the 'latex' function of the Hmisc package.
dat = matrix(c(1000, 100, 10000, 10000), 2)
latex(dat, file='')
This works (as expected) ...
4
votes
2answers
197 views
How to label a code section in Sweave
I'm new to sweave and was wondering what is the appropriate way to label a code section. For example, if I have:
<<echo= true>>=
x<-5
y<-x+5
@
How would I get it to put a either ...
4
votes
1answer
611 views
\SweaveInput{…} with UTF-8 encoding?
Some hack here.
In ?RweaveLatex manual, I found only paragraph about encoding in UTF-8 but considering Windows users:
The use of fancy quotes (see ‘sQuote’) can cause problems when
setting R ...
4
votes
1answer
69 views
Why are \twoheadleftarrow and \leftarrow so different? [Sweave, listings]
I am wondering why the \twoheadleftarrow in the code below looks so much
different from (worse than) the \leftarrow, although according to the LaTeX symbol list, the arrow heads should be of the same ...
4
votes
1answer
630 views
Making LaTeX documents with Hebrew? (in Sweave + RStudio)
I would like to write in Hebrew in an .Rnw file, and use it with RStudio.
Searching around, I found an example for using Hebrew in LaTeX in general:
Numbers, punctuation and parenthesis reversed in ...
4
votes
3answers
289 views
Sweave Multiple Chapters
I am writing a large Sweave document that will be broken up into many chapters with the final output being a large pdf of everything and an individual pdf for each chapter (with the same page and ...
4
votes
1answer
204 views
Sweave + sciposter conflict prevents italics in title
After some fooling around, I have determined that when package Sweave is loaded, italics in the title of a sciposter document is ignored (though underline works). I don't know enough to read the ...
4
votes
1answer
751 views
Difference between \Sexpr and <<>>=
I am new to sweave and learning a lot. For the most part \Sexpr works well for simple variables and also calling R functions.
But other times it will fail, I have found that I can get around this ...
4
votes
1answer
964 views
FancyVerb error for Sweave output in Beamer
I'm having trouble including Sweave output in my Beamer file. Specifically, the Soutput environment is causing problems (it runs if I comment those lines out, but, of course, the table is not ...
4
votes
2answers
1k views
Integrate 'Sweave.sty' in the TeXLive 2010 search path (on Linux)
I'd like to add 'Sweave.sty' to my search-path, so that I don't need to copy 'Sweave.sty' to every Sweave-Document I create.
I've located 'Sweave.sty' in '/usr/share/R/share/texmf/tex/latex'. I tried ...
3
votes
3answers
471 views
Table Limit: Sweave
I'm running into an issue. It seems that when I try to output more than 17 or 18 tables to a pdf document the remaining tables are ignored. When I split them across multiple Rnw files, there is no ...
3
votes
2answers
500 views
How to redirect SAS output to LaTeX?
I'm wondering how can the SAS output directly be redirect to LaTeX as we can do by using Sweave with R. Thanks
3
votes
1answer
2k views
What's the best tutorial for beamer, sweave and ggplot2 combined?
I'm looking for the best example presentation publicly available on the Internet that uses beamer, sweave and ggplot2 all at the same time. Ideally it would be the actual example .Rnw file, along with ...
3
votes
4answers
449 views
Auctex TOC with multifile document
I'm writing my PhD thesis with LaTeX-Sweave and I use EMACS with AucTex and ESS. I have a master file (master.tex) and some slave files and my question is about the use of the TOC in the slave files. ...
3
votes
1answer
28 views
Why could \usepackage{Sweave} be affecting my graphics scaling?
I'm using Sweave to produce a large, multi part academic thesis. I had neglected to specify \usepackage{Sweave} in my preamble, but everything was working fine until I added some verbatim output from ...
3
votes
2answers
627 views
Using the “master file” with emacs and Sweave
One of the things I love about emacs is being able to specify a master file, then compile an included .tex file - I just use C-c C-b
For sweave documents, I have the following layout:
master.Rnw
...
3
votes
0answers
246 views
Can I import existing .Rnw Sweave file into LyX? [closed]
I am trying to import an existing Sweave .Rnw file into LyX. I wonder whether LyX is capable of doing it? My LyX version is 2.02 and I can use its Sweave module with no problem. I find out it does ...
2
votes
2answers
870 views
Missing character: There is no ? in font cmr12!
I'm not quite sure how to diagnose this issue. This is what I see in my log file. However, there are no "?" symbols in my work.
FWIW, Here's my preamble:
\documentclass[12pt]{article}
...
2
votes
2answers
397 views
Reduce space between Sinput and Soutput
I'm using Sweave in the book document class, and I'm getting really huge spacing between Sinput and Soutput evironments.
\documentclass[11pt]{book}
\usepackage{Sweave}
\usepackage{boxedminipage}
...
2
votes
1answer
681 views
Using Sweave, how can I reliably get .PNG figures instead of .EPS or .PDF figures?
I have tried to set the options in the preamble:
\SweaveOpts{keep.source=TRUE, eps=FALSE, pdf=FALSE, png=TRUE}, but this does not reliably produce only .PNG (or indeed any!) figures. I say 'reliably' ...
2
votes
2answers
251 views
minted: How to pass LaTeX commands via \newminted and how to use different styles?
I would like to use minted to redefine the Sweave environments Sinput and Soutput (see the example below). This way, I can have minted format my R code. There are two problems left:
1) Is it possible ...
2
votes
2answers
2k views
How to teach latex to find Sweave.sty? [Ubuntu 12.04; TeXLive 2011]
I work on XUbuntu 12.04 and I have installed R 2.15. Since the package manager only provides TeX Live 2009, I use the following to install TeX Live 2011 on XUbuntu:
download install-tl-unx.tar.gz ...
2
votes
1answer
493 views
Sweave only produces NAs when using Umlauts.
I have a problem with Sweave. As soon as I use any mutated vowels/Umlauts (ü, ä, etc.) Sweave produces an NA in the document although it worked before. I don't know what to do, so any help would be ...
2
votes
1answer
66 views
PDFLaTeX produces black boxes after executing Sweave
There is the following code
\documentclass[a4paper]{article}
\begin{document}
hey there
<<>>=
1+1
@
\end{document}
I saved the example.Rnw in my home directory an ...
2
votes
2answers
110 views
Sweave, how to suppress opening new instance of a pdf when running pdflatex
Since I have setup SumatraPDF to automatically refresh PDFs when they change, how can I suppress "view" (resulting in opening a new instance of the pdf) when using the shortcut
M-n P (running ...
