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Recommendation from @Ulrike Fischer worked: I found default.tex used by Rstudio as a template when converting from Rmd to pdf (~/R/x86_64-pc-linux-gnu-library/3.2/rmarkdown/rmd/latex/default.tex) and removed \usepackage{lmodern} from there. After that this piece of code compiled correctly: --- output: pdf_document header-includes: - ...


There is no Cyrillic Times freely available in the current TeX distributions, so I suggest a different font: \documentclass{article} \usepackage[T2A,T1]{fontenc} % or OT1 instead of T1 \usepackage[utf8]{inputenc} \usepackage{mathptmx} \usepackage[russian,english]{babel} \DeclareRobustCommand{\cyrins}[1]{% \begingroup\fontfamily{erewhon-TLF}% ...

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