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A solution to your problem would be to add a script to your git workflow, that reformats your .bib-file. One such tool is biber in toolmode. Calling: $ biber --tool example.bib results in a nicely formated file called example_bibertool.bib: @ARTICLE{bib:farzaneh, AUTHOR = {Seyed Amir Farzaneh and Mehran Sohrabi}, BDSK-FILE-1 = ...


Do not use the BibTex keys as final numeric references in text. Is better left to JabRef generate automatically meaningful author-year BibTeX keys like Smith2005 instead of simple numbers. As commented by Torbjørn and Ulrike Fischer, the final reference number in the PDF is not the BibTeX key. According to the bibliography style, the number of the ...

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