In TeXStudio you can have magic comments:
% !TeX. I want to change their foreground color, but can't find that option in the
Syntax Highlighting tab in the configuration options.
How can I change that color?
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That setting is currently not configurable by the user. Will be fixed in the next release.
This is included since version 2.10.0:
Options -> Syntax Highlighting -> Basic Highlighting -> magicComment