3

I am assembling my thesis, and have the following two tables:

\documentclass{article}
\usepackage[margin=1in]{geometry}
\usepackage{pdflscape}
\usepackage{longtable}
\begin{document}
\begin{landscape}
\begin{longtable}{ r *{7}{l} }
  \caption{Amplified Genes in Claudin-Low Breast Cancer}\label{tab:genes}\\
  \hline
  & Gene & Description & Cytoband & Chr & Start & End & qValue \\ 
  \hline
  \endfirsthead
  \multicolumn{8}{c}{Table \ref{tab:genes}, continued}\\[1ex]
  \hline
 & Gene & Description & Cytoband & Chr & Start & End & qValue \\ 
  \hline
  \endhead
  \hline
  \multicolumn{8}{r@{}}{(continued on next page)}
  \endfoot
  \hline\hline
  \endlastfoot
1 & A26B1 & protein expressed in prostate, ovary, testis, & 15q11.2 & 15 & 19305252 & 19336667 & 0.0093683 \\

2 & APOD & apolipoprotein D precursor & 3q29 & 3 & 196776864 & 196792278 & 1.0584e-06 \\

3 & BEST3 & vitelliform macular dystrophy 2-like 3 isoform & 12q15 & 12 & 68333655 & 68379463 & 0.025626 \\

4 & BTNL3 & butyrophilin-like 3 & 5q35.3 & 5 & 180348506 & 180366333 & 0.15359 \\

5 & BTNL8 & butyrophilin-like 8 long form & 5q35.3 & 5 & 180258734 & 180310512 & 0.15359 \\

6 & BTNL8 & butyrophilin-like 8 short form & 5q35.3 & 5 & 180258764 & 180310512 & 0.15359 \\

7 & CCT2 & chaperonin containing TCP1, subunit 2 & 12q15 & 12 & 68265474 & 68281624 & 0.025626 \\

8 & CDC73 & parafibromin & 1q31.2 & 1 & 191357783 & 191487679 & 4.7334e-13 \\

9 & CNOT2 & CCR4-NOT transcription complex, subunit 2 & 12q15 & 12 & 68923043 & 69035040 & 0.025626 \\

10 & COMT & catechol-O-methyltransferase isoform MB-COMT & 22q11.21 & 22 & 18309308 & 18336530 & 0.063937 \\

11 & COMT & catechol-O-methyltransferase isoform S-COMT & 22q11.21 & 22 & 18330069 & 18336530 & 0.063937 \\

12 & CORO7 & coronin 7 & 16p13.3 & 16 & 4344543 & 4406640 & 0.0061408 \\

13 & CPM & carboxypeptidase M precursor & 12q15 & 12 & 67531222 & 67613246 & 0.025626 \\

14 & CPSF6 & cleavage and polyadenylation specific factor 6, & 12q15 & 12 & 67919583 & 67954405 & 0.025626 \\

15 & DDT & D-dopaome tautomerase & 22q11.23 & 22 & 22643553 & 22646680 & 0.049111 \\

16 & DDTL & D-dopaome tautomerase-like & 22q11.23 & 22 & 22639025 & 22644748 & 0.049111 \\

17 & DNAJA3 & DnaJ (Hsp40) homolog, subfamily A, member 3 & 16p13.3 & 16 & 4415882 & 4446776 & 0.0061408 \\

18 & DOK6 & docking protein 6 & 18q22.2 & 18 & 65219270 & 65660359 & 0.0002252 \\

19 & DUSP10 & dual specificity phosphatase 10 isoform a & 1q41 & 1 & 219941388 & 219982084 & 2.6646e-06 \\

20 & DUSP10 & dual specificity phosphatase 10 isoform b & 1q41 & 1 & 219941388 & 219977425 & 2.6646e-06 \\

21 & ERBB2 & erbB-2 isoform b & 17q12 & 17 & 35097918 & 35138441 & 3.6688e-18 \\

22 & ERBB2 & erbB-2 isoform a & 17q12 & 17 & 35109779 & 35138441 & 3.6688e-18 \\

23 & ERG & v-ets erythroblastosis virus E26 oncogene like & 21q22.2 & 21 & 38675670 & 38955488 & 0.010591 \\

24 & ERLIN2 & ER lipid raft associated 2 isoform 1 & 8p12 & 8 & 37713254 & 37734477 & 4.2319e-21 \\

25 & ERLIN2 & ER lipid raft associated 2 isoform 2 & 8p12 & 8 & 37713356 & 37723229 & 4.2319e-21 \\

26 & FLJ20433 & hypothetical protein LOC54932 & 9q34.3 & 9 & 139321168 & 139437535 & 0.022611 \\

27 & FLJ39743 & hypothetical protein LOC283777 & 15q26.3 & 15 & 96797913 & 96875134 & 0.071718 \\

28 & FLT3 & fms-related tyrosine kinase 3 & 13q12.2 & 13 & 27475410 & 27572729 & 0.0054575 \\

29 & FOXP4 & forkhead box P4 isoform 2 & 6p21.1 & 6 & 41622141 & 41678100 & 0.022611 \\

30 & FOXP4 & forkhead box P4 isoform 1 & 6p21.1 & 6 & 41622141 & 41678100 & 0.022611 \\

31 & FOXP4 & forkhead box P4 isoform 3 & 6p21.1 & 6 & 41622141 & 41678100 & 0.022611 \\

32 & FRS2 & fibroblast growth factor receptor substrate 2 & 12q15 & 12 & 68150395 & 68259829 & 0.025626 \\

33 & GAB1 & GRB2-associated binding protein 1 isoform a & 4q31.21 & 4 & 144477499 & 144610729 & 0.001173 \\

34 & GAB1 & GRB2-associated binding protein 1 isoform b & 4q31.21 & 4 & 144477499 & 144610729 & 0.001173 \\

35 & GSTT2 & glutathione S-transferase theta 2 & 22q11.23 & 22 & 22629600 & 22633393 & 0.049111 \\

36 & GSTT2B & glutathione S-transferase theta 2B & 22q11.23 & 22 & 22629600 & 22633368 & 0.049111 \\

37 & hsa-mir-570 & hsa-mir-570 & 3q29 & 3 & 196911451 & 196911548 & 1.0584e-06 \\

38 & IGF1R & insulin-like growth factor 1 receptor precursor & 15q26.3 & 15 & 97010283 & 97325282 & 0.071718 \\

39 & KCNMB4 & calcium-activated potassium channel beta 4 & 12q15 & 12 & 69046328 & 69111245 & 0.025626 \\

40 & KIT & v-kit Hardy-Zuckerman 4 feline sarcoma viral & 4q12 & 4 & 55218851 & 55301638 & 0.020895 \\

41 & LANCL2 & LanC lantibiotic synthetase component C-like 2 & 7p11.2 & 7 & 55400634 & 55468929 & 0.08329 \\

42 & LOC145814 & hypothetical protein LOC145814 & 15q26.3 & 15 & 97329031 & 97366314 & 0.071718 \\

43 & LOC283755 & hypothetical protein LOC283755 & 15q11.2 & 15 & 18848557 & 18971443 & 0.0093683 \\

44 & LOC283767 & hypothetical protein LOC283767 & 15q11.2 & 15 & 20287609 & 20296164 & 0.0093683 \\

45 & LOC646227 & hypothetical protein LOC646227 & 5q35.3 & 5 & 180341823 & 180345858 & 0.15359 \\

46 & LOC650137 & seven transmembrane helix receptor & 15q11.2 & 15 & 19915065 & 19915749 & 0.0093683 \\

47 & LRRC10 & leucine rich repeat containing 10 & 12q15 & 12 & 68288611 & 68291209 & 0.025626 \\

48 & LYZ & lysozyme precursor & 12q15 & 12 & 68028400 & 68034280 & 0.025626 \\

49 & Magmas & mitochondria-associated granulocyte macrophage & 16p13.3 & 16 & 4330252 & 4341301 & 0.0061408 \\

50 & MDFI & MyoD family inhibitor & 6p21.1 & 6 & 41714230 & 41729959 & 0.022611 \\

51 & MUC20 & mucin 20 isoform S & 3q29 & 3 & 196936768 & 196950211 & 1.0584e-06 \\

52 & MUC20 & mucin 20 isoform L & 3q29 & 3 & 196933423 & 196950211 & 1.0584e-06 \\

53 & NACA2 & nascent-polypeptide-associated complex alpha & 17q23.2 & 17 & 57022571 & 57023345 & 2.4899e-11 \\

54 & OR11H12 & olfactory receptor, family 11, subfamily H, & 14q11.1 & 14 & 18447593 & 18448574 & 0.015 \\

55 & OR4M2 & olfactory receptor, family 4, subfamily M, & 15q11.2 & 15 & 19869939 & 19870881 & 0.0093683 \\

56 & OR4N4 & olfactory receptor, family 4, subfamily N, & 15q11.2 & 15 & 19883836 & 19884787 & 0.0093683 \\

57 & PGC & progastricsin (pepsinogen C) & 6p21.1 & 6 & 41812429 & 41823099 & 0.022611 \\

58 & PIK3CA & phosphoinositide-3-kinase, catalytic, alpha & 3q26.32 & 3 & 180349004 & 180435191 & 0.0015206 \\

59 & PLXNC1 & plexin C1 & 12q22 & 12 & 93066629 & 93223356 & 0.034353 \\

60 & PTK2 & PTK2 protein tyrosine kinase 2 isoform b & 8q24.3 & 8 & 141737682 & 142080514 & 5.1411e-21 \\

61 & PTK2 & PTK2 protein tyrosine kinase 2 isoform a & 8q24.3 & 8 & 141737682 & 142080514 & 5.1411e-21 \\

62 & PTPRB & protein tyrosine phosphatase, receptor type, B & 12q15 & 12 & 69196898 & 69317486 & 0.025626 \\

63 & PTPRD & protein tyrosine phosphatase, receptor type, D & 9p23 & 9 & 8304245 & 10602509 & 0.04362 \\

64 & PTPRR & protein tyrosine phosphatase, receptor type, R & 12q15 & 12 & 69318128 & 69600851 & 0.025626 \\

65 & RAB3IP & RAB3A interacting protein isoform A & 12q15 & 12 & 68459020 & 68503251 & 0.025626 \\

66 & RAB3IP & RAB3A interacting protein isoform beta 1 & 12q15 & 12 & 68418897 & 68503251 & 0.025626 \\

67 & RAB3IP & RAB3A interacting protein isoform alpha 1 & 12q15 & 12 & 68418897 & 68503251 & 0.025626 \\

68 & RAB3IP & RAB3A interacting protein isoform beta 2 & 12q15 & 12 & 68419446 & 68503251 & 0.025626 \\

69 & RAB3IP & RAB3A interacting protein isoform alpha 2 & 12q15 & 12 & 68419446 & 68503251 & 0.025626 \\

70 & RB1 & retinoblastoma 1 & 13q14.2 & 13 & 47775883 & 47954027 & 0.11977 \\

71 & RET & ret proto-oncogene isoform c & 10q11.21 & 10 & 42892522 & 42942958 & 0.0038256 \\

72 & RET & ret proto-oncogene isoform a & 10q11.21 & 10 & 42892522 & 42945803 & 0.0038256 \\

73 & TFEB & transcription factor EB & 6p21.1 & 6 & 41759693 & 41810776 & 0.022611 \\

74 & TMPRSS11E & transmembrane protease, serine 11E & 4q13.2 & 4 & 68995761 & 69045917 & 7.5131e-06 \\

75 & TMPRSS11E2 & transmembrane protease, serine 11E2 & 4q13.2 & 4 & 68995761 & 69045917 & 7.5131e-06 \\

76 & UGT2B15 & UDP glycosyltransferase 2 family, polypeptide & 4q13.2 & 4 & 69194909 & 69218969 & 7.5131e-06 \\

77 & UGT2B17 & UDP glucuronosyltransferase 2 family, & 4q13.2 & 4 & 69085497 & 69116840 & 7.5131e-06 \\

78 & VASN & slit-like 2 & 16p13.3 & 16 & 4361849 & 4373530 & 0.0061408 \\

79 & YEATS4 & glioma-amplified sequence-41 & 12q15 & 12 & 68039798 & 68070843 & 0.025626 \\

80 & ZDHHC11 & zinc finger, DHHC-type containing 11 & 5p15.33 & 5 & 848721 & 904101 & 0.0080506 \\

81 & ZNF709 & zinc finger protein 709 & 19p13.2 & 19 & 12435742 & 12456632 & 1.98e-08 \\
\hline
\hline
\end{longtable}
\end{landscape}

\clearpage 
\begin{landscape}
\begin{longtable}{ r *{7}{l} }
  \caption{Simultaneously Amplified or Deleted Genes in Claudin-Low Breast Cancer}\label{tab:genes}\\
  \hline
  & Gene & Description & Cytoband & Chr & Start & End \\ 
  \hline
  \endfirsthead
  \multicolumn{8}{c}{Table \ref{tab:genes}, continued}\\[1ex]
  \hline
 & Gene & Description & Cytoband & Chr & Start & End & qValue \\ 
  \hline
  \endhead
  \hline
  \multicolumn{8}{r@{}}{(continued on next page)}
  \endfoot
  \hline\hline
  \endlastfoot
1 & A26B1 & protein expressed in prostate, ovary, testis, & 15q11.2 & 15 & 19305252 & 19336667 \\

2 & APOD & apolipoprotein D precursor & 3q29 & 3 & 196776864 & 196792278 \\

3 & DOK6 & docking protein 6 & 18q23 & 18 & 65219270 & 65660359 \\

4 & FLJ20433 & hypothetical protein LOC54932 & 9q34.3 & 9 & 139321168 & 139437535 \\

5 & FLT3 & fms-related tyrosine kinase 3 & 13q12.2 & 13 & 27475410 & 27572729 \\

6 & hsa-mir-570 & hsa-mir-570 & 3q29 & 3 & 196911451 & 196911548 \\

7 & LOC283755 & hypothetical protein LOC283755 & 15q11.2 & 15 & 18848557 & 18971443 \\

8 & LOC283767 & hypothetical protein LOC283767 & 15q11.2 & 15 & 20287609 & 20296164 \\

9 & LOC650137 & seven transmembrane helix receptor & 15q11.2 & 15 & 19915065 & 19915749 \\

10 & MUC20 & mucin 20 isoform L & 3q29 & 3 & 196933423 & 196950211 \\

11 & MUC20 & mucin 20 isoform S & 3q29 & 3 & 196936768 & 196950211 \\

12 & OR11H12 & olfactory receptor, family 11, subfamily H, & 14q11.1 & 14 & 18447593 & 18448574 \\

13 & OR4M2 & olfactory receptor, family 4, subfamily M, & 15q11.2 & 15 & 19869939 & 19870881 \\

14 & OR4N4 & olfactory receptor, family 4, subfamily N, & 15q11.2 & 15 & 19883836 & 19884787 \\

15 & PIK3CA & phosphoinositide-3-kinase, catalytic, alpha & 3q26.32 & 3 & 180349004 & 180435191 \\

16 & TMPRSS11E & transmembrane protease, serine 11E & 4q13.2.1 & 4 & 68995761 & 69045917 \\

17 & TMPRSS11E2 & transmembrane protease, serine 11E2 & 4q13.2.1 & 4 & 68995761 & 69045917 \\

18 & UGT2B15 & UDP glycosyltransferase 2 family, polypeptide & 4q13.2.1 & 4 & 69194909 & 69218969 \\

19 & UGT2B17 & UDP glucuronosyltransferase 2 family, & 4q13.2.1 & 4 & 69085497 & 69116840 \\

20 & ZDHHC11 & zinc finger, DHHC-type containing 11 & 5p15.33 & 5 & 848721 & 904101 \\
\hline
\hline
\end{longtable}
\end{landscape}
\end{document}

If you compile the code, you'll notice that the table numbers are exactly correct. For example, Table 1 is a longtable but is called "Table 2" on the subsequent pages. Shouldn't \clearpage take care of it? Thank you!

3

The issue is not related to \clearpage. The problem arises because you're re-using the same \label instruction in the second longtable environment. (If you look closely at the log file, you should find a warning message about re-used labels...)

I suggest you write

  \caption{Amplified Genes in Claudin-Low Breast Cancer}\label{tab:genes}\\
  ...
  \multicolumn{8}{c}{Table \ref{tab:genes}, continued}\\[1ex]

in the first longtable, and

  \caption{Simultaneously Amplified or Deleted Genes in Claudin-Low Breast Cancer}\label{tab:simul_genes}\\
  ...
  \multicolumn{8}{c}{Table \ref{tab:simul_genes}, continued}\\[1ex]

in the second.

By the way, since you have \hline\hline in the \endlastfoot field, shouldn't have \hline\hline at the end of the table as well unless you truly want quadruple horizontal lines -- which I sincerely hope isn't the case. :-)

  • 2
    Damn, you were quicker ;-) – user31729 May 19 '15 at 21:11
  • @Mico Thank you! So, the structure of the label can be the same, but there must a different table name, right? Thank you for your time! I am learning a lot! – Johnathan May 19 '15 at 21:22
  • @Johnathan - The "structure" of the \label instruction -- a macro that takes one argument -- is the same, but the argument of the instruction shouldn't be re-used. – Mico May 19 '15 at 21:35

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