Minimized MWE, because this is not related to a table header, but to the bold font used there:
\documentclass{article}
\makeatletter
\newcommand{\ion}[2]{#1$\;$\textsc{\rmfamily\@roman{#2}}\relax}
\makeatother
\begin{document}
\ion{He}{4}
\textbf{\ion{He}{4}}
\end{document}
You get the wrong appearance:
and a warning:
LaTeX Font Warning: Font shape `OT1/cmr/bx/sc' undefined
(Font) using `OT1/cmr/bx/n' instead on input line 9.
That means, a bold version with small caps is not available and the regular (normal) bold font is used. The Computer Modern fonts as its successors the Latin Modern fonts miss a bold variant for small caps.
A font with a bold variant is TG Termes a Times Roman clone from TeX Gyre font project:
\usepackage{tgtermes}
A poor man's solution would be to fake the small caps for the bold font by using uppercase letters and scaling them down to the size of the small caps lowercase letters. At least this avoids changing the entire font family.
\documentclass{article}
\usepackage{graphicx}
\makeatletter
\newcommand{\ion}[2]{%
#1$\;$%
% Test for bold font by inspecting \f@series, it can be "b" or "bx"
\if b\expandafter\@car\f@series\relax\@nil
\begingroup % keep changes to scratch box register 0 local
\sbox0{\rmfamily\mdseries\textsc{v}}%
\resizebox{!}{\ht0}{\rmfamily\@Roman{#2}}%
\endgroup
\else
\textsc{\rmfamily\@roman{#2}}%
\fi
}
\makeatother
\begin{document}
\ion{He}{4}
\textbf{\ion{He}{4}}
\end{document}
And now a robust version with hyperref
support. Then \ion
can also be used inside captions and section titles:
\documentclass{article}
\usepackage{graphicx}
\usepackage{hyperref}
\usepackage{bookmark}
\makeatletter
\newcommand{\ion}{}% Check, that \ion is not yet defined
\DeclareRobustCommand*{\ion}[2]{%
#1$\;$%
% Test for bold font by inspecting \f@series, it can be "b" or "bx"
\if b\expandafter\@car\f@series\relax\@nil
\begingroup % keep changes to scratch box register 0 local
\sbox0{\rmfamily\mdseries\textsc{v}}%
\resizebox{!}{\ht0}{\rmfamily\@Roman{#2}}%
\endgroup
\else
\textsc{\rmfamily\@roman{#2}}%
\fi
}
\makeatother
% hyperref support
\pdfstringdefDisableCommands{%
\renewcommand*{\ion}[2]{%
#1 %
\@Roman{#2}% LaTeX's version via \@slowromancap is expandable
}%
}
\begin{document}
\tableofcontents
\section{\ion{He}{4}}
\ion{He}{4}
\textbf{\ion{He}{4}}
\end{document}