I can reproduce the second picture in the question with
\documentclass[11pt]{IEEEtran}
\usepackage{amsmath}
\usepackage{newtxtext,newtxmath}
\usepackage{lipsum}
\begin{document}
\setcounter{equation}{30} % to reproduce the example
\lipsum*[2]
\begin{equation}
\begin{bmatrix}
-k_w + \sin \alpha_1 & -k_w +1 & -k_w + \sin \alpha_1 \\
\sin 5\alpha_1 & 1 & \sin 5\alpha_1 \\
\sin 7\alpha_1 & -11 & \sin7\alpha_1 \\
\end{bmatrix}
\begin{bmatrix}
N_1 \\ N_2 \\ N_3
\end{bmatrix}
=
\begin{bmatrix}
0 \\ 0 \\ 0
\end{bmatrix}
\end{equation}
\lipsum
\end{document}
I find it unacceptable that a big organization like IEEE still uses
\renewcommand{\rmdefault}{ptm}
and Computer Modern for math.
An immediate improvement can be obtained by doing \usepackage{mathptmx}
together with a trick for pushing the equation far left and decreasing locally \arraycolsep
:
\documentclass[11pt]{IEEEtran}
\usepackage{amsmath}
\usepackage{mathptmx}
\usepackage{lipsum}
\begin{document}
\setcounter{equation}{30} % to reproduce the example
\lipsum*[2]
\begin{equation}
\addtolength{\arraycolsep}{-3pt}
\hfilneg
\begin{bmatrix}
-k_w + \sin \alpha_1 & -k_w +1 & -k_w + \sin \alpha_1 \\
\sin 5\alpha_1 & 1 & \sin 5\alpha_1 \\
\sin 7\alpha_1 & -11 & \sin7\alpha_1 \\
\end{bmatrix}
\begin{bmatrix}
N_1 \\ N_2 \\ N_3
\end{bmatrix}
=
\begin{bmatrix}
0 \\ 0 \\ 0
\end{bmatrix}
\hspace{1000 pt minus 1fil}
\end{equation}
\lipsum
\end{document}
Better yet with
\usepackage{newtxtext,newtxmath}
instead of \usepackage{mathptmx}
:
[]
s, next break the line, here I'd probably wrap the inner contents in a gathered env and break the line (\\
) before the =. I don't know if there are good interfaces for this in LyX (it is a rather limited writing environment)bmatrix
etc as suggested by @daleif consider to replace the N-vector by N (maybe in boldface or with some other vector marker), and likewise the zero vector by zero (maybe with a vector marker). As a last resort, use a smaller font (no matter whether the publisher deems this acceptable or not): contents and readability is more important than editor rules.