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I am using R with knittr and LaTeX. I have isolated some error that has been occuring the following block:

<<>>=
opt_vals <- data.frame(opt_length=numeric(2000),
                       opt_eggs=numeric(2000))
for (i in 1:2000){
  sim_fit <- fitted(model2)+rnorm(18, 0, sd(stdres2))
  sim_data <- data.frame(sim_fit, 
                       length=data_set$length, 
                       length2=data_set$length2 )

  model4 <- lm(sim_fit ~ length + length2, data = sim_data)

  #Optimale laengde
  optimal_length <- -coef(model4)[2]/(2*coef(model4)[3])

  opt_vals$opt_length[i] <- optimal_length

  #Maximalt forventede aeg
  max_expected_eggs <- coef(model4)[1]-
    (coef(model4)
[2]^2/(4*coef(model4)[3]))

  opt_vals$opt_eggs[i] <- max_expected_eggs
  }
@

Whenever I include this code in my Knittr document, I get errors about a missing (or extra) $ or a forgotten }

Additional info: When I set <>= the error disappear so I think it's something in the typesetting, but I am not at all sure about how to fix it.

Edit: I am attaching an screenshot of the errors and code region.

Screen shot of errors and code

Any help is appreciated!

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  • 1
    Knits without a problem, and compiles without any errors at all. However the pdf output tells me that 'model2' is missing. Run on Win10, with updated MikTex 2.9, and R 3.1.3 installations.
    – R. Schumacher
    Mar 7, 2017 at 16:49
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    I think the last part of your comment was lost :)
    – msx
    Mar 7, 2017 at 16:51
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    @R.Schumacher That is very odd... I have attached an image showing the errors.
    – msx
    Mar 7, 2017 at 17:56
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    Did you actually run the knitr command in R on the *.Rnw file.
    – R. Schumacher
    Mar 7, 2017 at 22:16
  • I run it from R-studio.
    – msx
    Mar 7, 2017 at 22:28

1 Answer 1

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It seems something in knitr typesetting is incompatible with the mathtime pro 2 fonts, removing that solves the problem.

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