With reference to this question:
Is there any way I can have a custom output path for the PDFs for each different .tex file I compile?
For instance, I want to put File1.pdf in one folder on my computer, and File2 in completely different one.
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I had the same question as the OP.
As far as I know, this is not possible within TexStudio.
One could of course use an external script (in your preferred programming language) that would determine by e.g. a prefix in the filename where to move the compiled PDF (e.g. all tex/tikz figures output PDFs end up in a "figures" folder etc.).
It would however be a very nice feature, if this would be included in TexStudio.