I am trying to write a thesis following a template that has the following glossary items: Glossary, Abbreviations, Nomenclature and Symbols (some of them are part of the 'glossaries-extra' package). When I build the project normally, everything works fine, and these are the output files generated:
However, when I change the settings in Texmaker to use a sub-directory for the output files ("Options" -> "Configure Texmaker" -> "Commands" -> "Use a "build" subdirectory for output files"), some files aren't generated and I get an error message displayed on each page where the 4 glossary items should be:
These are the files generated in the sub-directory and there are quite a few missing:
There's also the following warning messages in Texmaker:
If I switch back to letting the output files go to the main folder, it runs again without any issues. It seems that the "build" sub-directory is causing the issue but I'm not sure why. Am I missing something?