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I'm working with this template. I can't seem to figure out how to remove some of the unwanted boxes, e.g. under the Abstract, there's a grey box that reads "Add new section about results in Chapter 4" or under Appendix A there's a white box with black border that reads "sec:first-app". I've fiddled with the code in main.tex and style.sty, but can't seem to locate the source(s) of these boxes. I'm wondering if these boxes are associated with varioref and hyperref.

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The grey box in the abstract comes from the following line

\todo[inline]{Add new section about results in \cref{sec:fourth}.}

in the code of abstract.tex:

\abstractintoc % Add abstract to Table of Contents  
\abstractnum   % Format abstract like a chapter
               % Remove if abstract should not be on its own page

\begin{abstract}
    \kant[1] % Dummy text
    \todo[inline]{Add new section about results in \cref{sec:fourth}.}
\end{abstract}

with the result:

abstract

To get rid of this line and the others simply delete/comment the line(s) with command \todo ...

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