How to use chemnum with chemdraw in xepersian?

Question

Pay attention to the first code that represents the numbering of molecules in a scheme that is imported into LaTeX from the ".eps" file and by the command

pdflatex -shell-escape file1.tex

runs without any problems.

\documentclass{book}

\usepackage{graphicx}       
\usepackage{hyperref}   
\usepackage{chemnum}
\usepackage{auto-pst-pdf}
\begin{document}

\begin{figure}
    \centering
    \replacecmpd{cmpd:1}
    \replacecmpd{cmpd:2}
    \replacecmpd{cmpd:3}
    \includegraphics[width=1\textwidth]{CyAZIDES.eps}
\end{figure}

\begin{figure}
    \centering
    \replacecmpd{cmpd:1}
    \replacecmpd{cmpd:2}
    \replacecmpd{cmpd:3}
    \replacecmpd{cmpd:4}
    \includegraphics[width=1\textwidth]{CyAZIDES2.eps}
\end{figure}
\end{document}

The second code that was created using xepersian and by command

xelatex --shell-escape file2.tex

has been created that does not replace numbers correctly.

\documentclass{book}

\usepackage{graphicx}       
\usepackage{hyperref}   
\usepackage{chemnum}
\usepackage{auto-pst-pdf}
\usepackage{xepersian}
\settextfont{Zar}

\begin{document}

\begin{figure}
    \centering
    \replacecmpd{cmpd:1}
    \replacecmpd{cmpd:2}
    \replacecmpd{cmpd:3}
    \includegraphics[width=1\textwidth]{CyAZIDES.eps}
\end{figure}

\begin{figure}
    \centering
    \replacecmpd{cmpd:1}
    \replacecmpd{cmpd:2}
    \replacecmpd{cmpd:3}
    \replacecmpd{cmpd:4}
    \includegraphics[width=1\textwidth]{CyAZIDES2.eps}
\end{figure}
\end{document}

Answer 1

The problem is not related to the xepersian package. I think (but I am not sure) this problem related to xelatex compiler (at least in texstudio for me). I saw this problem here and other place too. even without xepersian package you get this problem.
I find a trick for solve it. open 0-2.eps with notepad++ and change it as the below:

So your codes will change to this structure:

\documentclass[a4paper]{scrreprt}
\usepackage{float}
\usepackage{graphicx}       
\usepackage{hyperref}   
\usepackage{chemnum}
\usepackage{auto-pst-pdf}
\usepackage[localise,Kashida,computeautoilg]{xepersian}
\settextfont[Scale=1.5]{XB Niloofar}
\setlatintextfont[Scale=4.4]{Times New Roman}
\begin{document}
    \begin{latin}\centering
        Test
    \end{latin}
    \begin{latin}
        \begin{figure}[H]
            \centering
            \includegraphics[width=1\textwidth]
        \end{figure}
        \begin{figure}[H]
            \includegraphics[width=1\textwidth]{0-2.eps}
        \end{figure}
    \end{latin}
\end{document}

Where your compiler set as the below:

xelatex.exe -synctex=1 -interaction=nonstopmode %.tex

Otput:

Good luck.