3

my university has its own (I know stupid) ciation style, for which they provide a csl file to be used with zotero. Does anyone have similar regulations to follow at their university and maybe could provide some help or work-around?

I came across: https://github.com/zepinglee/citeproc-lua but am not too experienced with LaTex, just enjoy learning it bit by bit.

This is my uni's csl file https://www.zotero.org/styles/universitatsmedizin-gottingen

Help would be highly appreciated!!

EDIT3 (for the solution below with removed duplicates): Produces the following error.

enter image description here

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1: section [1{/usr/local/texlive/2022/texmf-var/fonts/map/pdftex/updmap/pdftex.map}<./Figures//Logo.png>] [2]

Declaration of Authorship

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1: section [3] [4]

Abstract

1: section [5] [6]

Acknowledgements

1: section [7] [8] (./these.toc) 1: section [9] [10] (./these.lof) 1: section [11] [12] (./these.lot) 1: section [13] [14] 1: section [15] [16]

Dedicatory

1: section [17] [18] 1: section (./Chapters/Chapter1.tex Chapter 1. 1: section [1]

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./Chapters/Chapter1.tex:51: Undefined control sequence. ...0; Emamzadeh 2016; Lautenschl{\textbackslasha }ger et al. 2018) l.51 ...h2016alpha,bartels2010n,lautenschlager2018c} . Importantly, the C-termi... ./Chapters/Chapter1.tex:53: Undefined control sequence. l.53 ...settings \cite{svensson2015vagotomy}. \cites {kordower2008lewy} investi... ./Chapters/Chapter1.tex:53: Undefined control sequence. l.53 ...om host tissue to the graft. Further, \cites {luk2012intracerebral} sho... ./Chapters/Chapter1.tex:53: Undefined control sequence. l.53 ...s came to full circle when a study by \cites {kim2019transneuronal} rev... ./Chapters/Chapter1.tex:72: Undefined control sequence. l.72 ...tasis and vesicular cycling. In fact, \cites {giguere2019increased} ind... [2] [3<./Figures/Aetiology.png>] [4 Missing character: There is no ’ (U+2019) in font ec-lmr10! <./Figures/synucleins.png>] [5]

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./Chapters/Chapter1.tex:91: Undefined control sequence. (Tol{\textbackslasho } et al. 2018) l.91 ...tive value \cite{tolo2018pathophysiological} .\

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[6] ./Chapters/Chapter1.tex:108: Undefined control sequence. l.108 ...di2007non}. Furthermore, research by \cites {liddelow2017neurotoxic} c... ./Chapters/Chapter1.tex:112: Undefined control sequence. (Lindstr{\textbackslasho }m et al. 2017; Rostami et al. 2017) l.112 ...te{lindstrom2017extensive,rostami2017human} . Nonetheless, astrocytes ... ./Chapters/Chapter1.tex:114: Undefined control sequence. l.114 .... Moreover, 6-OHDA lesion studies by \cites {kuter2019increased} ident... ./Chapters/Chapter1.tex:114: Undefined control sequence. ...ovic 2008; Schlaudraff and Sp{\textbackslasho }rkel 2014) l.114 ...ankovic2008parkinson,schlaudraff2014morbus} .\ [7] [8 Missing character: There is no ’ (U+2019) in font ec-lmr10! Missing character: There is no ’ (U+2019) in font ec-lmr10! ] ./Chapters/Chapter1.tex:151: Undefined control sequence. l.151 ...poradic disease, however research by \cites {polymeropoulos1997mutatio...

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./Chapters/Chapter1.tex:151: Undefined control sequence. l.151 ...r, $\alpha$-syn proteomic studies by \cites {sulzer2017t} identified t... ./Chapters/Chapter1.tex:167: Undefined control sequence. l.167 ...in ligase, respectively. Research by \cites {matheoud2016parkinson} in... [9] [10] ./Chapters/Chapter1.tex:235: Undefined control sequence. l.235 ...epidemiological clinical research by \cites {li2012subsequent} investi... [11 Missing character: There is no ’ (U+2019) in font ec-lmr10! ] [12<./Figures/Immunity.png>] [13]

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./Chapters/Chapter1.tex:264: Undefined control sequence. l.264 ...2004cytokines}. Moreover, a study by \cites {jangula2013lipopolysaccha... ./Chapters/Chapter1.tex:264: Undefined control sequence. l.264 ...e with the latter, a recent study by \cites {dohgu2019monomeric} expos... ./Chapters/Chapter1.tex:265: Undefined control sequence. l.265 Next, post-mortem research by \cites {gray2015striatal} pointed towards B... ./Chapters/Chapter1.tex:265: Undefined control sequence. l.265 ... any other brain area. For instance, \cites {chen2009severe} have show... ./Chapters/Chapter1.tex:266: Undefined control sequence. (Erd{\textbackslashH {o}} et al. 2017) l.266 ...eimer's disease, and PD \cite{erdHo2017age} . In addition, ageing is n... ./Chapters/Chapter1.tex:266: Undefined control sequence. l.266 ...ou2008altered}. Notably, research by \cites {vincent2008functional} di... ./Chapters/Chapter1.tex:267: Undefined control sequence. l.267 ...oimmunity. Specifically, research by \cites {louveau2018cns} using the... [14] [15<./Figures//BBB.png>] [16]

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[17]) [18<./Figures//SNARE.png>] [19] [20] ./these.tex:470: Undefined control sequence. l.37 ... Calopa M, Mestre M, Mollev{\textbackslashi } DG, Cutillas B, Ambrosi... l.470 \printbibliography

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./these.tex:470: Undefined control sequence. l.61 ..., Buchman V, Etherton MR, S{\textbackslashu }dhof TC (2010): alpha-sy... l.470 \printbibliography

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./these.tex:470: Undefined control sequence. l.127 ...to A, Dohm CP, Kermer P, B{\textbackslasha }hr M, Wouters FS (2007):... l.470 \printbibliography

-> Continues like this

7
  • maybe try to remove the \addbibresource{examples.json} line. It seems to produce an error.
    – michal.h21
    May 3 at 22:40
  • Okay, that works for your example.bib in your tex example. But if I run it without json in my .tex it doesn't work and it also does not work if I use my thesis bibliography.bib in your example tex. Could there by something wrong with my bibliography bibtex? and many thanks for your help I cannot empahsize enough how life saving this is :D EDIT: I updated the error/screenshot for the problem
    – poebelchen
    May 4 at 9:17
  • the error says that there is duplicate koch2015alpha entry in your bib file. Try to rename one of them. But it seems like a bug that it causes compilation error.
    – michal.h21
    May 4 at 11:33
  • I'll go through my .bib again and remove other duplicates as well. But you'd think that overall I'd have to wait for the package to mature? EDIT: So removing all duplicates actually made it typeset, however, it generates a range of errors which are UTF8 related I guess. Basically every non englisch letter is not typesetted. (will update above)
    – poebelchen
    May 4 at 14:53
  • It seems that citeproc-lua expects BIB file to be in the UTF_8 encoding, while you have LaTeX commands like \'o in your bib file. Fortunately, you can convert your bib file to the correct format using the biber --tool --output-format=bibtex -O new.bib examples.bib command (use suitable names for the bib files)
    – michal.h21
    May 4 at 19:23

2 Answers 2

8

It seems that styles that are not built-in can be referenced by their filename without extension. So copy the file universitatsmedizin-gottingen.csl to the directory with your TeX file, and then you can use something like:

\documentclass{article}

\usepackage{citation-style-language}
\cslsetup{style = universitatsmedizin-gottingen}
\addbibresource{examples.bib}
\addbibresource{examples.json}

\begin{document}

\cite{texbook,latex2e,ITEM-1}
\printbibliography

\end{document}

It uses two databases, one is traditional BibTeX file, examples.bib:

@book{texbook,
  author = {Donald E. Knuth},
  year = {1986},
  title = {The {TeX} Book},
  publisher = {Addison-Wesley Professional}
}

@book{latex:companion,
  author = {Frank Mittelbach and Michel Gossens
            and Johannes Braams and David Carlisle
            and Chris Rowley},
  year = {2004},
  title = {The {LaTeX} Companion},
  publisher = {Addison-Wesley Professional},
  edition = {2}
}

@book{latex2e,
  author = {Leslie Lamport},
  year = {1994},
  title = {{LaTeX}: a Document Preparation System},
  publisher = {Addison Wesley},
  address = {Massachusetts},
  edition = {2}
}

@article{knuth:1984,
  title={Literate Programming},
  author={Donald E. Knuth},
  journal={The Computer Journal},
  volume={27},
  number={2},
  pages={97--111},
  year={1984},
  publisher={Oxford University Press}
}

@inproceedings{lesk:1977,
  title={Computer Typesetting of Technical Journals on {UNIX}},
  author={Michael Lesk and Brian Kernighan},
  booktitle={Proceedings of American Federation of
             Information Processing Societies: 1977
             National Computer Conference},
  pages={879--888},
  year={1977},
  address={Dallas, Texas}
}

Other possibility is to use CSL JSON, like this examples.json:

[
    {
        "author": [
            {
                "family": "D’Arcus",
                "given": "Bruce"
            }
        ],
        "citation-key": "ITEM-1",
        "id": "ITEM-1",
        "issued": {
            "date-parts": [
                [
                    2005,
                    11,
                    22
                ]
            ]
        },
        "note": "The apostrophe in Bruce’s name appears in proper typeset form.",
        "publisher": "Routledge",
        "title": "Boundaries of dissent: Protest and state power in the media age",
        "type": "book"
    },
    {
        "author": [
            {
                "family": "Bennett",
                "given": "Frank G.",
                "suffix": "Jr."
            }
        ],
        "citation-key": "ITEM-2",
        "container-title": "Pac. Rim L. & Pol’y J.",
        "id": "ITEM-2",
        "issued": {
            "date-parts": [
                [
                    2009,
                    8
                ]
            ]
        },
        "page": "463-509",
        "title": "Getting property right: “informal” mortgages in the Japanese courts",
        "type": "article-journal",
        "volume": "18"
    },
    {
        "author": [
            {
                "family": "Lamport",
                "given": "Leslie"
            }
        ],
        "citation-key": "ITEM-3",
        "edition": "2",
        "id": "ITEM-3",
        "issued": {
            "date-parts": [
                [
                    1994
                ]
            ]
        },
        "publisher": "Addison-Wesley",
        "publisher-place": "Reading, MA, USA",
        "title": "LaTeX: A document preparation system: User’s guide and reference manual",
        "type": "book"
    },
    {
        "author": [
            {
                "family": "Mittelbach",
                "given": "Frank"
            },
            {
                "family": "Goossens",
                "given": "Michel"
            },
            {
                "family": "Braams",
                "given": "Johannes"
            },
            {
                "family": "Carlisle",
                "given": "David"
            },
            {
                "family": "Rowley",
                "given": "Chris"
            }
        ],
        "citation-key": "ITEM-4",
        "edition": "2",
        "id": "ITEM-4",
        "issued": {
            "date-parts": [
                [
                    2004
                ]
            ]
        },
        "publisher": "Addison-Wesley",
        "publisher-place": "Reading, MA, USA",
        "title": "The LaTeX companion",
        "type": "book"
    }
]

It produces the following result with lualatex:

enter image description here

13
  • 1
    I think the OP uses Zotero, so maybe they are interested in using a csl-json database. Maybe you will want to add this line as well: \addbibresource{example.json}?
    – Denis
    May 3 at 20:05
  • @Denis sure, but I don'ŧ have any example of csl-json unfortunately.
    – michal.h21
    May 3 at 20:11
  • 1
    @poebelchen do you use up-to-date TeX distribution? It should be part of TeX Live 2022
    – michal.h21
    May 3 at 20:59
  • 1
    @poebelchen yes, you need to updated MacTeX, as it is the distro with packages.
    – michal.h21
    May 3 at 21:14
  • 1
    @poebelchen it supports only \cite and \cites commands. You can see the documentation here: texdoc.org/serve/citation-style-language/0
    – michal.h21
    May 3 at 21:25
1

A bug report is always welcome at https://github.com/zepinglee/citeproc-lua/issues. It would be appreciated if you provide the full example that reproduce the errors.

From the output log, I can only provide the following suggestions.

  1. The CSL-JOSN format is preferred over the .bib format. The former is used in the internal of citeproc-lua as well as Unicode. The .bib database needs to be converted to CSL-JSON before processing. Unfortunately the current implementation of this converter is rather naive and it can't handle the conversion from \"o to Unicode. I'll try to implement this conversion in the next couple of weeks and can you provide the .bib file for testing? In general, if you use Zotero for maintaining the bibliographies, it's more convenient to export the items directly in CSL-JSON format so the conversion procedure can be skipped.

  2. The correct way to set the font in bibliography is \cslsetup{bib-font = \scriptsize} rather than \renewcommand*{\bibfont}. The latter is used in natbib and biblatex packages. It is necessary to add the traditional \bibfont interface? I generally prefer the key-value interface in many modern packages like siunitx.

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