I got the same error when using mathjax with nested equation containing spaces..
Error Instance raising \begin{aligned} ended with \end{split}
$$\begin{aligned}
& \,\,\,\, - {\partial \over \partial m} \log \sum_z q_e(z|x) q_r(y|z)
\\
&= \sum_z q_w(z|x) \left[ \begin{aligned}
\log {q_e(z|x) q_r(y|z) \over q_w(z|x)}
{\partial \over \partial m} \log q_w(z|x) \\
+ {\partial \over \partial m} \log q_e(z|x) q_r(y|z) \\
- {\partial \over \partial m}\log q_w(z|x) \end{aligned}
\right] - {\partial \over \partial m} l \\
&= \sum_z {\partial \over \partial m}\left[
q_w(z|x) \log {q_e(z|x) q_r(y|z) \over q_w(z|x)}
\right ]
- {\partial \over \partial m} l \\
&= {\partial \over \partial m} \sum_z \left[
q_w(z|x) \log {q_e(z|x) q_r(y|z) \over q_w(z|x)}
\right ]
- {\partial \over \partial m} l \\
-{\partial \over \partial m} D_{KL} &= {\partial \over \partial m} ELBO
- {\partial \over \partial m} l
\end{aligned}$$
Removing all newlines would remove the error, yielding
$$\begin{aligned}
& \,\,\,\, - {\partial \over \partial m} \log \sum_z q_e(z|x) q_r(y|z)
\\
&= \sum_z q_w(z|x) \left[ \begin{aligned}
\log {q_e(z|x) q_r(y|z) \over q_w(z|x)}
{\partial \over \partial m} \log q_w(z|x) \\
+ {\partial \over \partial m} \log q_e(z|x) q_r(y|z) \\
- {\partial \over \partial m}\log q_w(z|x) \end{aligned}
\right] - {\partial \over \partial m} l \\
&= \sum_z {\partial \over \partial m} \left[
q_w(z|x) \log {q_e(z|x) q_r(y|z) \over q_w(z|x)}
\right ] - {\partial \over \partial m} l \\
&= {\partial \over \partial m} \sum_z \left[
q_w(z|x) \log {q_e(z|x) q_r(y|z) \over q_w(z|x)}
\right ] - {\partial \over \partial m} l \\
-{\partial \over \partial m} D_{KL} &= {\partial \over \partial m} ELBO
- {\partial \over \partial m} l
\end{aligned}$$
Not sure which exact newline causing the problem, but maybe related to mathjax inserting {split} environment
\frac{-n}{
in the first line with a matching}
in the second column second line. You have to finish the fraction in the same cell as you start it.\frac{-n}{... \\ & ... }
and you can never do that: if you start a fraction (or any group) you must finish it before the\\
or&
that ends the aligment cell.