I don't know why the 2nd line here is not indented. Have I loaded a package that overrides indentation? It seems not to work inside an enumerate enviroment.
\documentclass[12pt]{article}
\usepackage[utf8]{inputenc}
\usepackage{fullpage}
\usepackage{amsfonts}
\usepackage{amsmath}
\usepackage{amssymb}
\usepackage{amsthm}
\usepackage{graphicx}
\usepackage[backend=biber, isbn=false, doi=false]{biblatex-chicago}
\newtheorem{lem}{Lemma}
\newtheorem{ex}{Example}
\newcommand{\Q}{\mathbb{Q}}
\newcommand{\Z}{\mathbb{Z}}
\newcommand{\N}{\mathbb{N}}
\newcommand{\R}{\mathbb{R}}
\newcommand{\C}{\mathbb{C}}
\DeclareMathOperator{\lcm}{lcm}
\DeclareMathOperator{\ord}{ord}
\title{Homework 2 - MATH 4001}
\author{Clyde Kertzer}
\date{\today}
\begin{document}
\setlength{\abovedisplayskip}{5pt}
\setlength{\belowdisplayskip}{5pt}
\setlength{\abovedisplayshortskip}{0pt}
\setlength{\belowdisplayshortskip}{0pt}
\setlength{\parindent}{20pt}
\maketitle
\begin{enumerate}
\item[2.] Show that the sequence of functions
$$ f_n(x)=\frac{n x}{1+n x} $$
does not converge uniformly on $[0,1]$.
Paragraph 2 (Why no indent)?
$$
for display math in LaTeX. See here.