If amsmath is loaded after zref-perpage, zref-perpage will not reset counters in each page. What should be done to fix this except changing the loading order:

This is a test \footnote{test}
This is another test \footnote{test}

Both packages zref-perpage and amstext (loaded by package amsmath) redefine \stepcounter to add some code. Package zref-perpage keeps the \stepcounter it finds, but amstext overwrites \stepcounter deleting the additions of zref-perpage.

Thus loading zref-perpage after amstext/amsmath is the correct workaround.

In the next version of zref the module zref-perpage will check for amstext and its redefinition of \stepcounter and will fix it.

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