http://www.ctan.org/tex-archive/macros/latex/contrib/hyperref/ has this note copied below:
amsmath
-------------
The environmentsequation
andeqnarray
are not supported too well. For example, there might be spacing problems (eqnarray
isn't recommended anyway, see CTAN:info/l2tabu/, the situation forequation
is unclear, because nobody is interested in investigating). Consider using the environments that packageamsmath
provide, e.g.gather
forequation
. The environmentequation
can even redefined to use gather:\usepackage{amsmath} \let\equation\gather \let\endequation\endgather`
However, gather
and equation
environment have the spacing difference as in the answer by Will in align vs equation. Thus my question:
In a document using both hyperref and amsmath, what is the best replacement for equation
?