Questions tagged [r]

R is an open source programming language and software environment for statistical computing and graphics. It is an implementation of the S programming language combined with lexical scoping semantics inspired by Scheme.

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467 views

what does “Error running C:/Users/user/AppData/Local/Programs/MIKTEX~1.9/miktex/bin/pdflatex.exe (exit code 1)” mean?

I am trying to run this code in Rsweave \documentclass[a4paper,12pt]{report} \usepackage[english]{babel} \usepackage[utf8]{inputenc} \usepackage{fancyhdr} \pagestyle{fancy} \fancyhf{} \rhead{\...
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1answer
204 views

Sweave breaking on escape characters? [closed]

I'm attempting to build out a pdf using texworks and sweave. I can get an output just fine except for a certain chunk of code and I can't tell why. Here's an example of it working: \documentclass[...
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0answers
149 views

Grid-like layout for pages containing a graph and a table [duplicate]

For an (R) analysis project I am working on I need to automatically generate reports containing graphs and tables that will later be reviewed by other people. I wrote my thesis in latex, but I never ...
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1answer
3k views

Import R plot in Latex

I am trying to import plot from R to LaTeX, in R, I used: plot() dev.print(device=pdf, file="price.pdf") dev.off() Then, in LaTeX, simply used \begin{figure}[ht!] \caption{Price} \...
2
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1answer
621 views

Integrating R or python plots to latex document

I have concern towards font used in latex. I would like to have consistent font in pdf/png and main document. I am using R currently, which is not a very good option, see (this or this; same post ...
3
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1answer
2k views

Plotsizes: Plotting with ggplot2 in R and using tikzdevice

I am a total newbie to R and LaTeX, and trying to write my masters thesis right now... I tried to get this answered via cran.r-project.org...but I failed... :( I am creating plots in R via ggplot2, ...
4
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1answer
1k views

Font size of references list in Pandoc

I am using RMarkdown to make a document with references from a .bib file as shown below. How can change the font size and line spacing of the references list printed at the end of the page --- author:...
2
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1answer
475 views

Fonts in latex and R [closed]

This question could be linked to this, this and this. However, I opened a new one because I tried two different options from the suggestions and getting different results. The aim is to get ...
5
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1answer
737 views

listings with R: keywords in variable names are highlighted when using underscores?

When using language=R as a lstlistings style, if a variable name contains a keyword surrounded by underscores it will be highlighted. See the image and code example below. What can I do to prevent ...
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0answers
419 views

Adjusting the text width of R listings in LaTex [closed]

Hi I have R codes that I am listing in my LaTex file with \begin{lstlisting}[language=R] R code \end{lstlisting} I have no specific listing setting in my preamble. My R code is very wide and ...
2
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1answer
108 views

Knitr/Sweave Format Code Output w/ Leading Characters

Using knitr/sweave, I need to format the R code output that gets echoed, according to editorial journal requirements. For example, the following chunk <<example,echo=TRUE>>= library(plyr)...
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0answers
133 views

glossaries with tikzDevice

I am using tikzDevice to run my R-scripts within latex. This is my code -- \documentclass{article} \usepackage[acronym]{glossaries} \usepackage{tikz} \makeglossaries \newacronym{gcd}{GCD}{...
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0answers
1k views

larger math fonts for R Markdown

I am looking for an "easy", i.e. not package dependent way of increasing the font size of the math equations I embed in my Rmd documents (eventually compiled by knitr). As an example: $$ \boxed{P(x=a;...
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1answer
177 views

No increment of a variable in a Sweave code chunk which is wrapped by a \whiledo loop

I already searched in different forums but until now I couldn’t find a solution. So I hope that you can help me… Like mentioned in the title there is no increment of my variable x in the code chunk ...
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1answer
692 views

MikTeX won't let me install packages

I'm trying to learn how to use TeX within R. I've downloaded R, RStudio, and proTeXt. When I try to compile it, I receive a message that I am missing several packages; however, when I try to find a ...
3
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2answers
3k views

Tables with reference to R objects in sweave / latex

I'm using knitr/R-sweave to produce a pdf-document wit LaTeX-code. I want to make a table with some numbers produced by some R calculations in the R-code-chuck above this table. When I usually want to ...
3
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0answers
721 views

Produce multiple documents using a loop in LaTex

I want to produce multiple documents in LaTeX. There is a list of values for every document that should be created, in the example it´s \mylist. My first approach was to use the \foreach function to ...
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1answer
530 views

How to create a latex table in R with significance stars?

I have a latex table generated as following in R: \documentclass[12pt,econ]{authesis} \usepackage{natbib} % natbib citation style \usepackage{url} % added 2015-067-06 bc the example .bib ...
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1answer
110 views

\lstinputlisting with R problem

I'm trying to include my R code in a Lyx document but get the following error when trying to convert to PDF: \lstinputlisting{MonteCarlo.R} ^^M *** (cannot \read ...
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0answers
574 views

general footnotes in xtable

I am using sweave to create pdf. Using xtable, I am trying to insert a general footnotes under the table (i.e: This symbol means bla bla bla). I've tried a lot of things and everything get me an error ...
1
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1answer
182 views

make the TeX xtable results well formatted and easier to read

Is there a way to make the TeX xtable source code results well formatted and easier to read. Example: library(xtable) ## Load example dataset data(tli) print(tli.table) gives \begin{table}[ht] \...
2
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1answer
213 views

Set TeXstudio for Unicode .Rnw files (Sweave)

I tried to run Sweave on a .Rnw file from TeXstudio, but the unicode characters don't show up in the .tex file when I typeset with xelatex. My user command is /usr/local/bin/Rscript -e "Sweave('%.Rnw'...
4
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1answer
935 views

2D correlation plot matrix with shapes

Is there a straightforward way to create a correlation plot matrix similar to the figure below? The image is an example of R's corrplot package using circles, which also offers other shapes and ...
2
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1answer
934 views

siunitx: What is the correct way to output mean and standard deviation as “M (SD)” in an S-column?

I am trying to use siunitx in a psychology results table to line up decimals, and the table looks like this: \documentclass[]{article} \begin{document} \begin{table}[h] \begin{tabular}{@{}cc@{}} ...
3
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3answers
467 views

How to extract a series of text not in an environment, but with defined commands enclosing them

Under Windows 8, I am using R and the knitr package in RStudio with an .Rnw script. My regex skills are passable, but only in R. My document has about thirty pages with a different text section at ...
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0answers
613 views

Writing R code in TeXstudio

I have one chapter of my document which include R code. Whole document is written in TeXstudio. I need help regarding writing and executing R code using Texstudio. Regards
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2answers
1k views

How to avoid page break after table?

I have a small LaTeX table (tabular) created in R with the xtable package and I would like to place a figure underneath the table on the SAME page. I have tried various things (using packages float, ...
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1answer
99 views

Following .Rnw works fine in RStudio but throws error in LyX

This .Rnw compiles fine in RStudio Version 0.99.862 \documentclass{book} \usepackage{Rd} % Rstudio will be able to find this .sty file \begin{document} <<label=Test, echo=FALSE, results='...
2
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1answer
893 views

How to align multiple equation using tcolorbox in latex enviroment for Rmarkdown

I have the following latex inside Rmarkdown: \begin{tcolorbox} \begin{equation} \sigma = \beta_{0} \label{eq:Model0} \end {...
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1answer
562 views

Including TikZ picture in Sweave gets me an overfull box error

I have some difficulties in R Sweave so I hope someone could help me. I want to include two TikZ pictures using minipage and figure to the R Sweave but I get an error: Overfull \hbox (2.43085pt too ...
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2answers
465 views

Where set font in tikzDevice-plots (.Rnw)

I'm trying to use sans serif fonts for the text in plots (ggplot2) made by R, within KOMA-book. Unfortunately I'm not very experienced in managing fonts and their families. To keep things consistent, ...
1
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1answer
2k views

Sweave R code chunk default colors in vignette

Typically, if I create a .Rnw file and add R code chunks to it, and then convert it to .pdf file, the R code text will have default color and font than the rest of the document text. An example ...
29
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4answers
2k views

Literate R Programming

I'd like to embed some R into a LaTeX document. After a bit of googling I found that Sweave and knitr allow you to do this. I compiled a simple example with Sweave and it works. I'd be much obliged ...
5
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1answer
8k views

align, aligned and R Markdown

I have been working in R Markdown, which supports LaTeX, including in display mode. I had the following snippet for displaying aligned equations $$ \begin{align} a_1 &= \beta_0 \\ b_1 &= \...
2
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1answer
212 views

Conditional evaluation of Sweave chunk

I'm using some R code to import and manipulate a time series. The code takes some minutes to run and, as a result, it generates a relatively small time series. Now, to prevent typesetting to take an ...
2
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1answer
867 views

Insert line break into knitr fig.cap?

I am using knitr and want to insert a line break in my fig.cap chunk option. Is this possible? The following is all I can think of but it doesn't work. I expect there's some evaluation option but I ...
13
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3answers
9k views

Using LaTeX font in R (Computer Modern)

I am looking for at way to plot graphs in R, using LaTeX fonts. In the documentation for pdfFonts in R, it states that: There are also mappings for "ComputerModern", "ComputerModernItalic" and, ...
2
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0answers
137 views

What is the counterpart in LaTeX for the R package ezknitr and its tools for managing paths and directories

Dean Attali has just added an R package called ezknitr to CRAN. It enables those who use knitr and RMarkdown in .Rmd files to handle directories quite flexibly. His blog describes it well: path ...
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0answers
53 views

Graphics prepared with Sweave and text disorder

I am preparing a report using Sweave, it is really beautiful, but the first introductory words of my pdf-file appear after the first R-plot! How to fix it? I would like to add that I've already tried ...
1
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0answers
3k views

Error 43 while knitting a markdown to pdf in a R project created on mac and run on Windows

I created a R project which outputs some plots to pdf using rmarkdown::render with an .Rmd file. I shared the folder when the R project and all the relative files are kept to a colleague using Google ...
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1answer
1k views

Error in compiling LaTeX (bmcart.cls not found)

I'm a complete beginner to LaTeX. I want to try a latex template, so I: Created a new R Sweave file in RStudio Copied and pasted the source in https://www.overleaf.com/latex/templates/biomed-central-...
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2answers
498 views

With knitr and LaTex, how can you arrange the List of Figures alphabetically?

What code will enable me to reorganize the List of Figures alphabetically (and keep the page number)? My goal is to include that alphabetical listing of figures in the PDF file that is created. Here ...
1
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0answers
98 views

Knitr Plot Tooltips for ADA Compliance

I would like to use Knitr to generate plots in R that have hover-over tooltips. Here is a working example without an R tooltip: \documentclass{article} \usepackage{pdfcomment} \begin{...
1
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0answers
357 views

Extra Curly Braces when creating Xtable using Knitr, after specifiying size

I'm creating a R Markdown document using knitr and am running into trouble using xtable to create a table. My table is very large and I'm trying to reduce the size using the size command in the print ...
11
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2answers
1k views

Encrypt and decrypt parts of text in a LaTeX source file

Assume that you have some text in parts of your LaTeX document that you only want people with a password to see. A reason could e.g. be a case with an guiding answer. You want to make the case public ...
4
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1answer
326 views

tikzDevice in R, set absolutlely all fonts, fontsizes and fontweights to TeX document fontsize

I am learning R, and I want to use tikz to inlcude R plots in my documents. However, to me, half the point is that I want to set absolutely all typefaces, fontsizes, fontweights to the TeX-document ...
1
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1answer
110 views

Setting up winefish to compile sweave

The winefish latex editor has a "texbox" field in the preferences window, which tells it how to do various things, like PDFlatex for example. There is something about regular expressions, a command ...
3
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2answers
2k views

Running R code from latex. (alternative to knitr)

If you want to export the output of an R script to latex and create a pdf document you can use the package Knitr with RStudio. But I guess this is only a good practise for short results. What if I ...
4
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3answers
2k views

Citations in tabular environment not working

I'm writing my thesis with Rmarkdown but with a lot of LaTeX mixed in. When I compile the document, all my citations appear just fine, but those in my table appear as [?]. I have tested different ...
0
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0answers
272 views

R, Metafor package and Latex output

I have a problem in exporting output produced in R using the metafor package to latex. The object I'm trying to export are few rma and rma.mv outputs. As example, I'll post some output of the rma ...